RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	DAL3	P32459	195 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	EUG1	P32474	517 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	YKR075C	P36155	307 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	TRZ1	P36159	838 aa	Predicted RBP	4.53	□□□□□ -1.68
CUP9	YPL177C	CCT3	P39077	534 aa	Known RBP	4.53	□□□□□ -1.68
CUP9	YPL177C	MNN11	P46985	422 aa	Known RBP	4.53	□□□□□ -1.68
CUP9	YPL177C	REC102	Q02721	264 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	YHM2	Q04013	314 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	YLR407W	Q06070	228 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	MRI1	Q06489	411 aa	Known RBP	4.53	□□□□□ -1.68
CUP9	YPL177C	ECM3	Q99252	613 aa		4.53	□□□□□ -1.68
CUP9	YPL177C	SSB1	P11484	613 aa	Known RBP	4.52	□□□□□ -1.69
CUP9	YPL177C	IMG2	P25642	146 aa	Predicted RBP	4.52	□□□□□ -1.69
CUP9	YPL177C	SEC65	P29478	273 aa		4.52	□□□□□ -1.69
CUP9	YPL177C	REV7	P38927	245 aa		4.52	□□□□□ -1.69
CUP9	YPL177C	BDH2	P39713	417 aa		4.52	□□□□□ -1.69
CUP9	YPL177C	GET2	P40056	285 aa		4.52	□□□□□ -1.69
CUP9	YPL177C	SSB2	P40150	613 aa	Known RBP	4.52	□□□□□ -1.69
CUP9	YPL177C	CTK1	Q03957	528 aa	Known RBP	4.52	□□□□□ -1.69
CUP9	YPL177C	HMO1	Q03973	246 aa	Known RBP	4.52	□□□□□ -1.69
CUP9	YPL177C	YKL033W-A	Q86ZR7	236 aa		4.52	□□□□□ -1.69
CUP9	YPL177C	YKU70	P32807	602 aa		4.51	□□□□□ -1.69
CUP9	YPL177C	FAT1	P38225	669 aa		4.51	□□□□□ -1.69
CUP9	YPL177C	FMO1	P38866	432 aa		4.51	□□□□□ -1.69
CUP9	YPL177C	NOP9	P47077	666 aa	Known RBP	4.51	□□□□□ -1.69
CUP9	YPL177C	GLO1	P50107	326 aa		4.51	□□□□□ -1.69
CUP9	YPL177C	YMR210W	Q03649	449 aa		4.51	□□□□□ -1.69
CUP9	YPL177C	SWI6	P09959	803 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	OAF3	P36023	863 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	DID4	P36108	232 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.5	□□□□□ -1.69	not detected
CUP9	YPL177C	ARG2	P40360	574 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	PAN2	P53010	1115 aa	Predicted RBP	4.5	□□□□□ -1.69
CUP9	YPL177C	FOL1	P53848	824 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	YPS7	Q06325	596 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	VPS36	Q06696	566 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	VHS3	Q08438	674 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	HFI1	Q12060	488 aa		4.5	□□□□□ -1.69
CUP9	YPL177C	RPN13	O13563	156 aa		4.49	□□□□□ -1.69
CUP9	YPL177C	GLN4	P13188	809 aa	Known RBP	4.49	□□□□□ -1.69
CUP9	YPL177C	MVD1	P32377	396 aa	Known RBP	4.49	□□□□□ -1.69
CUP9	YPL177C	YBR071W	P38243	211 aa		4.49	□□□□□ -1.69
CUP9	YPL177C	FHN1	P53279	174 aa		4.49	□□□□□ -1.69
CUP9	YPL177C	NOP15	P53927	220 aa	Predicted RBP	4.49	□□□□□ -1.69
CUP9	YPL177C	PTA1	Q01329	785 aa	Predicted RBP	4.49	□□□□□ -1.69
CUP9	YPL177C	RCR2	Q03446	210 aa	Known RBP	4.49	□□□□□ -1.69
CUP9	YPL177C	FRS1	P15624	595 aa	Known RBP	4.48	□□□□□ -1.69
CUP9	YPL177C	ORC2	P32833	620 aa		4.48	□□□□□ -1.69
CUP9	YPL177C	SER1	P33330	395 aa	Known RBP	4.48	□□□□□ -1.69
CUP9	YPL177C	GLG1	P36143	616 aa		4.48	□□□□□ -1.69
CUP9	YPL177C	SFB3	P38810	929 aa		4.48	□□□□□ -1.69
CUP9	YPL177C	NUP60	P39705	539 aa		4.48	□□□□□ -1.69
CUP9	YPL177C	GPP2	P40106	250 aa	Known RBP	4.48	□□□□□ -1.69
CUP9	YPL177C	RSC8	P43609	557 aa	Known RBP	4.48	□□□□□ -1.69
CUP9	YPL177C	TRE2	Q08693	809 aa		4.48	□□□□□ -1.69
CUP9	YPL177C	RPS17A	P02407	136 aa	Known RBP	4.47	□□□□□ -1.69
CUP9	YPL177C	RPS17B	P14127	136 aa	Known RBP	4.47	□□□□□ -1.69
CUP9	YPL177C	PEX1	P24004	1043 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	PAC2	P39937	518 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	DUG1	P43616	481 aa	Known RBP	4.47	□□□□□ -1.69
CUP9	YPL177C	CTR1	P49573	406 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	COG6	P53959	839 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	SEC5	P89102	971 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	RMP1	Q12530	201 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	APM4	Q99186	491 aa		4.47	□□□□□ -1.69
CUP9	YPL177C	IME1	P21190	360 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	PET127	P32606	800 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	YPT7	P32939	208 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	ENP1	P38333	483 aa	Known RBP	4.46	□□□□□ -1.7
CUP9	YPL177C	PAF1	P38351	445 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	VID28	P40547	921 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	NIT2	P47016	307 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	ATG4	P53867	494 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	RIM13	Q03792	727 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	STP4	Q07351	490 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	DIA2	Q08496	732 aa	Predicted RBP	4.46	□□□□□ -1.7
CUP9	YPL177C	OSW1	Q08692	278 aa		4.46	□□□□□ -1.7
CUP9	YPL177C	ERG20	P08524	352 aa	Known RBP	4.45	□□□□□ -1.7
CUP9	YPL177C	HOM2	P13663	365 aa	Known RBP	4.45	□□□□□ -1.7
CUP9	YPL177C	ATP12	P22135	325 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	AEP2	P22136	580 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	VPS34	P22543	875 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	PHO11	P35842	467 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	PHO12	P38693	467 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	DUN1	P39009	513 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	BUD8	P41698	603 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	BIT61	P47041	543 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	THI22	Q06490	572 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	YPR027C	Q12079	277 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	MLH3	Q12083	715 aa		4.45	□□□□□ -1.7
CUP9	YPL177C	CDC26	P14724	124 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	MRC1	P25588	1096 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	BCS1	P32839	456 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	TFC4	P33339	1025 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	TOM20	P35180	183 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	IES1	P43579	692 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	MRK1	P50873	501 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	SKY1	Q03656	742 aa		4.44	□□□□□ -1.7
CUP9	YPL177C	VBA4	Q04602	768 aa	Known RBP	4.44	□□□□□ -1.7
CUP9	YPL177C	ZRT2	Q12436	422 aa		4.44	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms