RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	MEF2	P39677	819 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	IMA5	P40884	581 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	BUD8	P41698	603 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	CTH1	P47976	325 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	TAF4	P50105	388 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	REC102	Q02721	264 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	SLU7	Q02775	382 aa	Known RBP	4.69	□□□□□ -1.66
CTK1	YKL139W	MCM21	Q06675	368 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	VPS36	Q06696	566 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	PEX19	Q07418	342 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	NPC2	Q12408	173 aa		4.69	□□□□□ -1.66
CTK1	YKL139W	CBP3	P21560	335 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	GFD2	P25370	566 aa	Known RBP	4.68	□□□□□ -1.66
CTK1	YKL139W	APT2	P36973	181 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	MAD2	P40958	196 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	MNT2	P53059	558 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	VPS62	P53285	467 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	YAP6	Q03935	383 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	DUS4	Q06063	367 aa		4.68	□□□□□ -1.66
CTK1	YKL139W	SSM4	P40318	1319 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	GFA1	P14742	717 aa	Known RBP	4.67	□□□□□ -1.66
CTK1	YKL139W	MCM10	P32354	571 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	PSY4	P38193	441 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	RPP1	P38786	293 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	SSP120	P39931	234 aa	Known RBP	4.67	□□□□□ -1.66
CTK1	YKL139W	PXA1	P41909	870 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	NSE5	Q03718	556 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	HMO1	Q03973	246 aa	Known RBP	4.67	□□□□□ -1.66
CTK1	YKL139W	VBA4	Q04602	768 aa	Known RBP	4.67	□□□□□ -1.66
CTK1	YKL139W	RXT3	Q07458	294 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	NEW1	Q08972	1196 aa	Known RBP	4.67	□□□□□ -1.66
CTK1	YKL139W	DIN7	Q12086	430 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	VPS5	Q92331	675 aa		4.67	□□□□□ -1.66
CTK1	YKL139W	RNR1	P21524	888 aa	Known RBP	4.66	□□□□□ -1.66
CTK1	YKL139W	TAF5	P38129	798 aa		4.66	□□□□□ -1.66
CTK1	YKL139W	ECM1	P39715	212 aa		4.66	□□□□□ -1.66
CTK1	YKL139W	NRG1	Q03125	231 aa		4.66	□□□□□ -1.66
CTK1	YKL139W	ENT2	Q05785	613 aa		4.66	□□□□□ -1.66
CTK1	YKL139W	NOP12	Q08208	459 aa	Known RBP	4.66	□□□□□ -1.66
CTK1	YKL139W	DBP10	Q12389	995 aa	Known RBP	4.66	□□□□□ -1.66
CTK1	YKL139W	YOL087C	Q99247	1116 aa		4.66	□□□□□ -1.66
CTK1	YKL139W	ERG20	P08524	352 aa	Known RBP	4.65	□□□□□ -1.66
CTK1	YKL139W	ERG6	P25087	383 aa	Known RBP	4.65	□□□□□ -1.66
CTK1	YKL139W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.66	not detected
CTK1	YKL139W	YPT7	P32939	208 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	PPE1	P38796	400 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	BIT61	P47041	543 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	MRPS35	P53292	345 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	ARC35	P53731	342 aa	Known RBP	4.65	□□□□□ -1.66
CTK1	YKL139W	YNR071C	P53757	342 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	MRPL22	P53881	309 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	GCN5	Q03330	439 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	PPN1	Q04119	674 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	ACK1	Q07622	623 aa	Predicted RBP	4.65	□□□□□ -1.66
CTK1	YKL139W	BRE4	Q07660	1125 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	TGL5	Q12043	749 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	RRI2	Q12348	645 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	TRM11	Q12463	433 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	ECM3	Q99252	613 aa		4.65	□□□□□ -1.66
CTK1	YKL139W	PHO5	P00635	467 aa		4.65	□□□□□ -1.67
CTK1	YKL139W	MTC7	P32633	139 aa		4.65	□□□□□ -1.67
CTK1	YKL139W	RMA1	P36001	430 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	NOC2	P39744	710 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	MNT3	P40549	630 aa		4.65	□□□□□ -1.67
CTK1	YKL139W	NOP9	P47077	666 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	PEF1	P53238	335 aa		4.65	□□□□□ -1.67
CTK1	YKL139W	TEX1	P53851	422 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	SQS1	P53866	767 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	HRP1	Q99383	534 aa	Known RBP	4.65	□□□□□ -1.67
CTK1	YKL139W	MCM3	P24279	971 aa	Known RBP	4.64	□□□□□ -1.67
CTK1	YKL139W	CDC20	P26309	610 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	CHS3	P29465	1165 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	PRE4	P30657	266 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	CTF13	P35203	478 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	POL12	P38121	705 aa	Predicted RBP	4.64	□□□□□ -1.67
CTK1	YKL139W	STT3	P39007	718 aa	Known RBP	4.64	□□□□□ -1.67
CTK1	YKL139W	PLB1	P39105	664 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	PUG1	P40100	303 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	PRM2	P40534	656 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	SMK1	P41808	388 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	CPR6	P53691	371 aa	Known RBP	4.64	□□□□□ -1.67
CTK1	YKL139W	YDR132C	Q03900	495 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	YMR018W	Q04364	514 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	GAD1	Q04792	585 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	EIS1	Q05050	843 aa	Known RBP	4.64	□□□□□ -1.67
CTK1	YKL139W	OPY2	Q06810	360 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	ATG11	Q12527	1178 aa		4.64	□□□□□ -1.67
CTK1	YKL139W	URA3	P03962	267 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	RPS9B	P05755	195 aa	Known RBP	4.63	□□□□□ -1.67
CTK1	YKL139W	HMG2	P12684	1045 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	NCP1	P16603	691 aa	Known RBP	4.63	□□□□□ -1.67
CTK1	YKL139W	PRP22	P24384	1145 aa	Known RBP	4.63	□□□□□ -1.67
CTK1	YKL139W	CAD1	P24813	409 aa	Known RBP	4.63	□□□□□ -1.67
CTK1	YKL139W	KAR4	P25583	335 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	CWH43	P25618	953 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	LIP5	P32875	414 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	MPE1	P35728	441 aa	Known RBP	4.63	□□□□□ -1.67
CTK1	YKL139W	GET2	P40056	285 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	MEP3	P53390	489 aa		4.63	□□□□□ -1.67
CTK1	YKL139W	MRPL13	Q02204	264 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms