RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeast

Gene CKS1, Length 453 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CKS1	YBR135W	COX18	P53239	316 aa		5.78	□□□□□ -1.48
CKS1	YBR135W	UBX4	P54730	416 aa		5.78	□□□□□ -1.48
CKS1	YBR135W	CLU1	Q03690	1277 aa	Known RBP	5.78	□□□□□ -1.48
CKS1	YBR135W	NSE5	Q03718	556 aa		5.78	□□□□□ -1.48
CKS1	YBR135W	OMS1	Q06668	471 aa		5.78	□□□□□ -1.48
CKS1	YBR135W	RRP6	Q12149	733 aa	Known RBP	5.78	□□□□□ -1.48
CKS1	YBR135W	SSK2	P53599	1579 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	ERG20	P08524	352 aa	Known RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	LAT1	P12695	482 aa	Known RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	PFK1	P16861	987 aa	Known RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	PWP2	P25635	923 aa	Known RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	DGR2	P32330	852 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	LYS9	P38999	446 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	EAF5	P39995	279 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	GET2	P40056	285 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	YIR042C	P40586	236 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	BUD8	P41698	603 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	BAP3	P41815	604 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	BIT61	P47041	543 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	AVT1	P47082	602 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	MTD1	Q02046	320 aa	Known RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	CWC2	Q12046	339 aa	Predicted RBP	5.77	□□□□□ -1.49
CKS1	YBR135W	ECM3	Q99252	613 aa		5.77	□□□□□ -1.49
CKS1	YBR135W	PMA1	P05030	918 aa	Known RBP	5.76	□□□□□ -1.49
CKS1	YBR135W	YBR053C	P38235	358 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	AMA1	P50082	593 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	TAF4	P50105	388 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	MUP1	P50276	574 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	MTL1	P53214	551 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	CTK1	Q03957	528 aa	Known RBP	5.76	□□□□□ -1.49
CKS1	YBR135W	PPN1	Q04119	674 aa		5.76	□□□□□ -1.49
CKS1	YBR135W	MET3	P08536	511 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	PGI1	P12709	554 aa	Known RBP	5.75	□□□□□ -1.49
CKS1	YBR135W	HOP1	P20050	605 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	RIM4	P38741	713 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	HOS4	P40480	1083 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	PXA1	P41909	870 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	DLT1	Q04216	342 aa		5.75	□□□□□ -1.49
CKS1	YBR135W	VBA4	Q04602	768 aa	Known RBP	5.75	□□□□□ -1.49
CKS1	YBR135W	ESP1	Q03018	1630 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	YEL076C-A	P0CX16	216 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	YLR464W	P0CX17	216 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	PEX1	P24004	1043 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	KTR4	P38131	464 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	FUI1	P38196	639 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.74	□□□□□ -1.49	not detected
CKS1	YBR135W	STL1	P39932	569 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	YEL076C	P39971	216 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	ELO3	P40319	345 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	YIL092W	P40497	633 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	PUS4	P48567	403 aa	Known RBP	5.74	□□□□□ -1.49
CKS1	YBR135W	TAN1	P53072	289 aa	Predicted RBP	5.74	□□□□□ -1.49
CKS1	YBR135W	CEG1	Q01159	459 aa	Predicted RBP	5.74	□□□□□ -1.49
CKS1	YBR135W	VMS1	Q04311	632 aa	Known RBP	5.74	□□□□□ -1.49
CKS1	YBR135W	THI22	Q06490	572 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	PSF3	Q12146	194 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	POM34	Q12445	299 aa		5.74	□□□□□ -1.49
CKS1	YBR135W	CAF20	P12962	161 aa	Known RBP	5.73	□□□□□ -1.49
CKS1	YBR135W	KIN82	P25341	720 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	MTC7	P32633	139 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	IES5	P40060	125 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	HIS6	P40545	261 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	SPO1	P53541	631 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	ATG16	Q03818	150 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	TRM13	Q12383	476 aa		5.73	□□□□□ -1.49
CKS1	YBR135W	PHO3	P24031	467 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	PRP22	P24384	1145 aa	Known RBP	5.72	□□□□□ -1.49
CKS1	YBR135W	CTS1	P29029	562 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	PRE4	P30657	266 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	YHR033W	P38690	423 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	FMO1	P38866	432 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	CCT3	P39077	534 aa	Known RBP	5.72	□□□□□ -1.49
CKS1	YBR135W	NUP60	P39705	539 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	QRI7	P43122	407 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	ASK10	P48361	1146 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	PAP2	P53632	584 aa	Known RBP	5.72	□□□□□ -1.49
CKS1	YBR135W	DIA2	Q08496	732 aa	Predicted RBP	5.72	□□□□□ -1.49
CKS1	YBR135W	NUR1	Q12066	484 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	YOL114C	Q12322	202 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	VPS5	Q92331	675 aa		5.72	□□□□□ -1.49
CKS1	YBR135W	MYO2	P19524	1574 aa	Known RBP	5.72	□□□□□ -1.49
CKS1	YBR135W	MSS18	P08593	268 aa		5.71	□□□□□ -1.5
CKS1	YBR135W	EFT1	P32324	842 aa	Known RBP	5.71	□□□□□ -1.5
CKS1	YBR135W	YHL041W	P38730	149 aa		5.71	□□□□□ -1.5
CKS1	YBR135W	SAW1	P39735	261 aa		5.71	□□□□□ -1.5
CKS1	YBR135W	SSP120	P39931	234 aa	Known RBP	5.71	□□□□□ -1.5
CKS1	YBR135W	PRM2	P40534	656 aa		5.71	□□□□□ -1.5
CKS1	YBR135W	PHO23	P50947	330 aa		5.71	□□□□□ -1.5
CKS1	YBR135W	RGC1	Q06108	1083 aa	Known RBP	5.71	□□□□□ -1.5
CKS1	YBR135W	YCF1	P39109	1515 aa	Known RBP	5.7	□□□□□ -1.5
CKS1	YBR135W	RPS9B	P05755	195 aa	Known RBP	5.7	□□□□□ -1.5
CKS1	YBR135W	SDS22	P36047	338 aa		5.7	□□□□□ -1.5
CKS1	YBR135W	MNT2	P53059	558 aa		5.7	□□□□□ -1.5
CKS1	YBR135W	CEF1	Q03654	590 aa	Predicted RBP	5.7	□□□□□ -1.5
CKS1	YBR135W	HLR1	Q04429	423 aa		5.7	□□□□□ -1.5
CKS1	YBR135W	BRE1	Q07457	700 aa	Known RBP	5.7	□□□□□ -1.5
CKS1	YBR135W	RTK1	Q12100	620 aa	Predicted RBP	5.7	□□□□□ -1.5
CKS1	YBR135W	ARP7	Q12406	477 aa		5.7	□□□□□ -1.5
CKS1	YBR135W	ERG4	P25340	473 aa		5.69	□□□□□ -1.5
CKS1	YBR135W	HCM1	P25364	564 aa		5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms