RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 THRAP3Q9Y2W1 955 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 LAMA4Q16363 1823 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 ESPNB1AK53 854 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 HMGB1P09429 215 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 RBM10P98175 930 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 IMMTQ16891 758 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 NSUN7Q8NE18 718 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 AHDC1Q5TGY3 1603 aaPredicted RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 PLCH1Q4KWH8 1693 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 PTPDC1A2A3K4 754 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 ZFYP08048 801 aaPredicted RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 PDIA3P30101 505 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 ADD2P35612 726 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 PUM3Q15397 648 aaKnown RBP12.54□□□□□ -0.4
CUX1-221ENST00000622516 CCDC183Q5T5S1 534 aa12.54□□□□□ -0.4
CUX1-221ENST00000622516 ZNF213O14771 459 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 PHLPP1O60346 1717 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 PFKFB2O60825 505 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 LIG1P18858 919 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 RASGRF1Q13972 1273 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 OTUD7BQ6GQQ9 843 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 LINC00116Q8NCU8 138 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 RXRAP19793 462 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 LRRFIP1Q32MZ4 808 aaKnown RBP12.53□□□□□ -0.4
CUX1-221ENST00000622516 LPIN2Q92539 896 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 SPATA32Q96LK8 384 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 PPP1R9BQ96SB3 815 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.53□□□□□ -0.47e-7■■■□□ 15.6
CUX1-221ENST00000622516 GJB4Q9NTQ9 266 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 MYH3P11055 1940 aa12.53□□□□□ -0.4
CUX1-221ENST00000622516 AKAP11Q9UKA4 1901 aa12.52□□□□□ -0.4
CUX1-221ENST00000622516 PRC1O43663 620 aa12.52□□□□□ -0.4
CUX1-221ENST00000622516 PDE6AP16499 860 aa12.52□□□□□ -0.4
CUX1-221ENST00000622516 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.4
CUX1-221ENST00000622516 UBAP1LF5GYI3 381 aa12.52□□□□□ -0.41
CUX1-221ENST00000622516 NTSR2O95665 410 aa12.52□□□□□ -0.41
CUX1-221ENST00000622516 ERFEQ4G0M1 354 aa12.52□□□□□ -0.41
CUX1-221ENST00000622516 SPATA5Q8NB90 893 aa12.52□□□□□ -0.41
CUX1-221ENST00000622516 NBPF3Q9H094 633 aa12.52□□□□□ -0.41
CUX1-221ENST00000622516 TOM1O60784 492 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 FGFR2P21802 821 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 PLCB2Q00722 1185 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 CTNNA3Q9UI47 895 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 COL22A1Q8NFW1 1626 aaPredicted RBP12.51□□□□□ -0.41
CUX1-221ENST00000622516 GOLGA6L4A6NEF3 574 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 ANTXR2P58335 489 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 CCDC152Q4G0S7 254 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 TBC1D10CQ8IV04 446 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 LTBP4Q8N2S1 1624 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 MROH5Q6ZUA9 1318 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 KLF18A0A0U1RQI7 1052 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 PRKAB2O43741 272 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 PHF14O94880 888 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 GTF2E1P29083 439 aaPredicted RBP12.51□□□□□ -0.41
CUX1-221ENST00000622516 IGHMBP2P38935 993 aaKnown RBP12.51□□□□□ -0.41
CUX1-221ENST00000622516 RALYLQ86SE5 291 aaKnown RBP12.51□□□□□ -0.41
CUX1-221ENST00000622516 CCDC144CPQ8IYA2 1237 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 CKAP2LQ8IYA6 745 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 LEO1Q8WVC0 666 aaPredicted RBP12.51□□□□□ -0.41
CUX1-221ENST00000622516 AIDAQ96BJ3 306 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 SENP2Q9HC62 589 aa12.51□□□□□ -0.41
CUX1-221ENST00000622516 ANKRD36CQ5JPF3 1778 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 SLC5A1P13866 664 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 CHRNDQ07001 517 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 RESTQ13127 1097 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 MIGA1Q8NAN2 632 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 SMARCC2Q8TAQ2 1214 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 AGXT2Q9BYV1 514 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 ARMT1Q9H993 441 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 SRP68Q9UHB9 627 aaKnown RBP12.5□□□□□ -0.41
CUX1-221ENST00000622516 ARID4AP29374 1257 aaPredicted RBP12.5□□□□□ -0.41
CUX1-221ENST00000622516 MCM5P33992 734 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 CSPP1Q1MSJ5 1256 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 BARGINQ6ZT62 677 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 PGBD1Q96JS3 809 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 NWD2Q9ULI1 1742 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 TAF1P21675 1872 aa12.5□□□□□ -0.41
CUX1-221ENST00000622516 GOLGA8BA8MQT2 603 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 FDPSP14324 419 aaKnown RBP12.49□□□□□ -0.41
CUX1-221ENST00000622516 GYG1P46976 350 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
CUX1-221ENST00000622516 MB21D2Q8IYB1 491 aaPredicted RBP12.49□□□□□ -0.41
CUX1-221ENST00000622516 NCOA7Q8NI08 942 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 DACT1Q9NYF0 836 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 COL4A1P02462 1669 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 TCRBV5S4A2TA0A5A2 114 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 B4E1Z4 1266 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 MBD4O95243 580 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 CTDSPL2Q05D32 466 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 PARP10Q53GL7 1025 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 ZSCAN25Q6NSZ9 544 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 CYB5R4Q7L1T6 521 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 AMIGO3Q86WK7 504 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 ABCF2Q9UG63 623 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 USP25Q9UHP3 1055 aa12.49□□□□□ -0.41
CUX1-221ENST00000622516 TBC1D9BQ66K14 1250 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 BICD2Q8TD16 824 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 STRBPQ96SI9 672 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms