RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 C1QTNF9BB2RNN3 333 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 FDX1P10109 184 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ATF4P18848 351 aaPredicted RBP4.01□□□□□ -1.77
VPS35-209ENST00000568642 BDNFP23560 247 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ZNF76P36508 570 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 GJA8P48165 433 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 EIF4G2P78344 907 aaKnown RBP eCLIP4.01□□□□□ -1.77
VPS35-209ENST00000568642 ARID5AQ03989 594 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 PTPN12Q05209 780 aaKnown RBP4.01□□□□□ -1.77
VPS35-209ENST00000568642 LONRF3Q496Y0 759 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 C4orf48Q5BLP8 95 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ZFYVE27Q5T4F4 411 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 RETREG3Q86VR2 466 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 GLYCTKQ8IVS8 523 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ZSCAN29Q8IWY8 852 aaPredicted RBP4.01□□□□□ -1.77
VPS35-209ENST00000568642 CNPY4Q8N129 248 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 SIX5Q8N196 739 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 OGFOD1Q8N543 542 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 GPATCH11Q8N954 259 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 FOXJ1Q92949 421 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 IL17RAQ96F46 866 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ABHD8Q96I13 439 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 PKNOX2Q96KN3 472 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 C8orf48Q96LL4 319 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 SYT17Q9BSW7 474 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 MTA3Q9BTC8 594 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 FAM126AQ9BYI3 521 aaPredicted RBP4.01□□□□□ -1.77
VPS35-209ENST00000568642 CCSER2Q9H7U1 834 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 TYW1Q9NV66 732 aaKnown RBP4.01□□□□□ -1.77
VPS35-209ENST00000568642 EVA1BQ9NVM1 165 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 PCDHGB7Q9Y5F8 929 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 PLCH2O75038 1416 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 ADGRB2O60241 1585 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 GLI3P10071 1580 aa4.01□□□□□ -1.77
VPS35-209ENST00000568642 UGGT2Q9NYU1 1516 aa4□□□□□ -1.77
VPS35-209ENST00000568642 CAMSAP2Q08AD1 1489 aa4□□□□□ -1.77
VPS35-209ENST00000568642 CASZ1Q86V15 1759 aa4□□□□□ -1.77
VPS35-209ENST00000568642 SPINT1O43278 529 aa4□□□□□ -1.77
VPS35-209ENST00000568642 DNAJC6O75061 913 aa4□□□□□ -1.77
VPS35-209ENST00000568642 PRPF40AO75400 957 aaKnown RBP4□□□□□ -1.77
VPS35-209ENST00000568642 WEE1P30291 646 aa4□□□□□ -1.77
VPS35-209ENST00000568642 HTRA3P83110 453 aa4□□□□□ -1.77
VPS35-209ENST00000568642 UBE4AQ14139 1066 aa4□□□□□ -1.77
VPS35-209ENST00000568642 EZH2Q15910 746 aaKnown RBP4□□□□□ -1.77
VPS35-209ENST00000568642 CD163Q86VB7 1156 aa4□□□□□ -1.77
VPS35-209ENST00000568642 FAM9BQ8IZU0 186 aa4□□□□□ -1.77
VPS35-209ENST00000568642 THEMISQ8N1K5 641 aaPredicted RBP4□□□□□ -1.77
VPS35-209ENST00000568642 ZCRB1Q8TBF4 217 aaKnown RBP4□□□□□ -1.77
VPS35-209ENST00000568642 TSR2Q969E8 191 aaKnown RBP4□□□□□ -1.77
VPS35-209ENST00000568642 MKL1Q969V6 931 aa4□□□□□ -1.77
VPS35-209ENST00000568642 ZNF512BQ96KM6 892 aaPredicted RBP4□□□□□ -1.77
VPS35-209ENST00000568642 FHDC1Q9C0D6 1143 aaPredicted RBP4□□□□□ -1.77
VPS35-209ENST00000568642 SPC25Q9HBM1 224 aa4□□□□□ -1.77
VPS35-209ENST00000568642 ZFP64Q9NPA5 681 aa4□□□□□ -1.77
VPS35-209ENST00000568642 MBIPQ9NS73 344 aa4□□□□□ -1.77
VPS35-209ENST00000568642 CNTN3Q9P232 1028 aa4□□□□□ -1.77
VPS35-209ENST00000568642 CEP126Q9P2H0 1117 aa4□□□□□ -1.77
VPS35-209ENST00000568642 NRBP1Q9UHY1 535 aa4□□□□□ -1.77
VPS35-209ENST00000568642 A2MP01023 1474 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 ZNF518AQ6AHZ1 1483 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 PKD1L2Q7Z442 2459 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 DISP2A7MBM2 1401 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 CFAP69A5D8W1 941 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 FAM221BA6H8Z2 402 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 CCDC85CA6NKD9 419 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 ATP5J2-PTCD1G3V325 749 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 GPR25O00155 361 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 GPR182O15218 404 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 COBLO75128 1261 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 LGR5O75473 907 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 FGAP02671 866 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 LDHBP07195 334 aaKnown RBP3.99□□□□□ -1.77
VPS35-209ENST00000568642 CHRNA4P43681 627 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 FKBP5Q13451 457 aaPredicted RBP3.99□□□□□ -1.77
VPS35-209ENST00000568642 DOC2BQ14184 412 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 RASA3Q14644 834 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 PTPRNQ16849 979 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 CCDC184Q52MB2 194 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 ARTNQ5T4W7 220 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 SOGA3Q5TF21 947 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 LARP1Q6PKG0 1096 aaKnown RBP3.99□□□□□ -1.77
VPS35-209ENST00000568642 KIAA0907Q7Z7F0 614 aaPredicted RBP3.99□□□□□ -1.77
VPS35-209ENST00000568642 USP48Q86UV5 1035 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 PGBD3Q8N328 593 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 GAS2L2Q8NHY3 880 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 TSC1Q92574 1164 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 FAM129BQ96TA1 746 aa3.99□□□□□ -1.77
VPS35-209ENST00000568642 PRDM15P57071 1507 aaPredicted RBP3.99□□□□□ -1.77
VPS35-209ENST00000568642 SETD5Q9C0A6 1442 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 EXOC5O00471 708 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 KLF4O43474 513 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 FZD6O60353 706 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 SORBS3O60504 671 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 IBSPP21815 317 aaPredicted RBP3.98□□□□□ -1.77
VPS35-209ENST00000568642 FSHRP23945 695 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 GNALP38405 381 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 CTSOP43234 321 aaPredicted RBP3.98□□□□□ -1.77
VPS35-209ENST00000568642 USP46P62068 366 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 MTMR2Q13614 643 aa3.98□□□□□ -1.77
VPS35-209ENST00000568642 NBPF8Q3BBV2 869 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms