RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 WASHC4Q2M389 1173 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 PCDHA7Q9UN72 937 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 ABCC6O95255 1503 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 ECM29Q5VYK3 1845 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 C4AP0C0L4 1744 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 C4BP0C0L5 1744 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 GOLGA6L19H0YKK7 550 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 ATP2B3Q16720 1220 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 CCDC73Q6ZRK6 1079 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 TOM1L2Q6ZVM7 507 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 MTERF4Q7Z6M4 381 aaKnown RBP8.78□□□□□ -1
LIMA1-213ENST00000552720 DHX40Q8IX18 779 aaKnown RBP8.78□□□□□ -1
LIMA1-213ENST00000552720 FAM89AQ96GI7 184 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 XAGE2Q96GT9 111 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 CCDC94Q9BW85 323 aaPredicted RBP8.78□□□□□ -1
LIMA1-213ENST00000552720 PUS7LQ9H0K6 701 aaKnown RBP8.78□□□□□ -1
LIMA1-213ENST00000552720 GPR108Q9NPR9 543 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 CLIC4Q9Y696 253 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 PAPPAQ13219 1627 aa8.78□□□□□ -1
LIMA1-213ENST00000552720 FGAP02671 866 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 ZAP70P43403 619 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 CHAF1AQ13111 956 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-213ENST00000552720 STX1AQ16623 288 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 PPP4R3BQ5MIZ7 849 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-213ENST00000552720 FILIP1Q7Z7B0 1213 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 CCDC191Q8NCU4 936 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 ZCRB1Q8TBF4 217 aaKnown RBP8.77□□□□□ -1.01
LIMA1-213ENST00000552720 TOGARAM1Q9Y4F4 1720 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 SPATA31A3Q5VYP0 1347 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 RGL2O15211 777 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 KINO60870 393 aaKnown RBP8.77□□□□□ -1.01
LIMA1-213ENST00000552720 TNNT1P13805 278 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 NDUFA8P51970 172 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 ANTXR2P58335 489 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 CBX1P83916 185 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 FAM160A1Q05DH4 1040 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 TTC39AQ5SRH9 613 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 GORABQ5T7V8 394 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 AOPEPQ8N6M6 819 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 ZNF274Q96GC6 653 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-213ENST00000552720 CEP126Q9P2H0 1117 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 HPS5Q9UPZ3 1129 aa8.77□□□□□ -1.01
LIMA1-213ENST00000552720 KLF18A0A0U1RQI7 1052 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 KIF28PB7ZC32 967 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 PRC1O43663 620 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 CCDC57Q2TAC2 916 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 LRRC8AQ8IWT6 810 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 FMR1NBQ8N0W7 255 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-213ENST00000552720 PKNOX2Q96KN3 472 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 ZNF396Q96N95 335 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-213ENST00000552720 AIFM3Q96NN9 605 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.76□□□□□ -1.01
LIMA1-213ENST00000552720 PCDH11XQ9BZA7 1347 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 PCDH11YQ9BZA8 1340 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 MYH3P11055 1940 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 GOLGA8BA8MQT2 603 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 BECN2A8MW95 431 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 RXRAP19793 462 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 TPD52L1Q16890 204 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-213ENST00000552720 DPCR1Q3MIW9 517 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 ZNF592Q92610 1267 aa8.76□□□□□ -1.01
LIMA1-213ENST00000552720 NEDD4P46934 1319 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 XIRP1Q702N8 1843 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 BIN1O00499 593 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CTIFO43310 598 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CIAO1O76071 339 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 ECM2O94769 699 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 U2AF2P26368 475 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 IMMTQ16891 758 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CCDC158Q5M9N0 1113 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 ISM2Q6H9L7 571 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 SARM1Q6SZW1 724 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 MB21D2Q8IYB1 491 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 MRPS27Q92552 414 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 SDF4Q9BRK5 362 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 ISCA1Q9BUE6 129 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 PRDM11Q9NQV5 511 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 ORC3Q9UBD5 711 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CHD4Q14839 1912 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 WDR17Q8IZU2 1322 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CTAGE5O15320 804 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 GPTP24298 496 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 NCBP1Q09161 790 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 STK38Q15208 465 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 NBPF11Q86T75 865 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 PDCL2Q8N4E4 241 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 LINC00301Q8NCQ3 95 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 ANKRD7Q92527 254 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 MRFAP1L1Q96HT8 127 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 C8orf76Q96K31 380 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 NBPF3Q9H094 633 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 SENP2Q9HC62 589 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 STRN4Q9NRL3 753 aa8.75□□□□□ -1.01
LIMA1-213ENST00000552720 TRMT1Q9NXH9 659 aaKnown RBP8.75□□□□□ -1.01
LIMA1-213ENST00000552720 CCDC69A6NI79 296 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 UBE2Q2LH0YL09 131 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 GPAA1O43292 621 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 SKILP12757 684 aa8.74□□□□□ -1.01
LIMA1-213ENST00000552720 CDC25BP30305 580 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms