RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 IGFBP4P22692 258 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 SEC13P55735 322 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 ECM1Q16610 540 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 CDPF1Q6NVV7 123 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 GATA6Q92908 595 aa4.23□□□□□ -1.73
LIMA1-209ENST00000552008 MKRN1Q9UHC7 482 aaKnown RBP4.23□□□□□ -1.73
LIMA1-209ENST00000552008 TIAF1O95411 115 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 RNASE1P07998 156 aaKnown RBP4.22□□□□□ -1.73
LIMA1-209ENST00000552008 CABP4P57796 275 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 CYP27A1Q02318 531 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 ANKLE2Q86XL3 938 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 TREML1Q86YW5 311 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 SMG8Q8ND04 991 aaKnown RBP4.22□□□□□ -1.73
LIMA1-209ENST00000552008 POM121Q96HA1 1249 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 ARXQ96QS3 562 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 CSRNP1Q96S65 589 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 PPP1R16BQ96T49 567 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 HINFPQ9BQA5 517 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 PBX4Q9BYU1 374 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 CYP4F12Q9HCS2 524 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 ZNF777Q9ULD5 760 aaPredicted RBP4.22□□□□□ -1.73
LIMA1-209ENST00000552008 COG6Q9Y2V7 657 aa4.22□□□□□ -1.73
LIMA1-209ENST00000552008 LGR5O75473 907 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 FUT4P22083 530 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 MLANAQ16655 118 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 CRTC2Q53ET0 693 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-209ENST00000552008 ZNF765Q7L2R6 523 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 SLC7A3Q8WY07 619 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 CCDC97Q96F63 343 aaPredicted RBP4.21□□□□□ -1.74
LIMA1-209ENST00000552008 MYO19Q96H55 970 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 YIPF2Q9BWQ6 316 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 TMPRSS13Q9BYE2 586 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 SUGCTQ9HAC7 445 aa4.21□□□□□ -1.74
LIMA1-209ENST00000552008 MBNL3Q9NUK0 354 aaKnown RBP4.21□□□□□ -1.74
LIMA1-209ENST00000552008 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.21□□□□□ -1.74
LIMA1-209ENST00000552008 INHBBP09529 407 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 SCNN1AP37088 669 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 CTSWP56202 376 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 BNIP3Q12983 259 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 TRIP4Q15650 581 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-209ENST00000552008 HOMEZQ8IX15 550 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 LRRN4CLQ8ND94 238 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 EZH1Q92800 747 aaPredicted RBP4.2□□□□□ -1.74
LIMA1-209ENST00000552008 POP1Q99575 1024 aaKnown RBP4.2□□□□□ -1.74
LIMA1-209ENST00000552008 FAM53CQ9NYF3 392 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 ADAMTS6Q9UKP5 1117 aa4.2□□□□□ -1.74
LIMA1-209ENST00000552008 DRD2P14416 443 aa4.19□□□□□ -1.74
LIMA1-209ENST00000552008 VTI1AQ96AJ9 217 aa4.19□□□□□ -1.74
LIMA1-209ENST00000552008 MISP3Q96FF7 219 aa4.19□□□□□ -1.74
LIMA1-209ENST00000552008 ATP9BO43861 1147 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 KIF4AO95239 1232 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 CD8BP10966 210 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 ARL4DP49703 201 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 C19orf57Q0VDD7 668 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 ZSWIM9Q86XI8 627 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 C2CD4AQ8NCU7 369 aaPredicted RBP4.18□□□□□ -1.74
LIMA1-209ENST00000552008 PI4K2BQ8TCG2 481 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 CALR3Q96L12 384 aaKnown RBP4.18□□□□□ -1.74
LIMA1-209ENST00000552008 LRFN2Q9ULH4 789 aa4.18□□□□□ -1.74
LIMA1-209ENST00000552008 UBAP1LF5GYI3 381 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 TTC39BQ5VTQ0 682 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-209ENST00000552008 HGSNATQ68CP4 663 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 SYDE1Q6ZW31 735 aaPredicted RBP4.17□□□□□ -1.74
LIMA1-209ENST00000552008 NCAPG2Q86XI2 1143 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 CEP120Q8N960 986 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 USP26Q9BXU7 913 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 SERPINA10Q9UK55 444 aa4.17□□□□□ -1.74
LIMA1-209ENST00000552008 LOC100289279A0A1B0GTE1 492 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 ZNF503-AS2A6NEH8 195 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 FOXO3O43524 673 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 MAP7Q14244 749 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 KCNMB1Q16558 191 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 AMIGO3Q86WK7 504 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 FNBP4Q8N3X1 1017 aaPredicted RBP4.16□□□□□ -1.74
LIMA1-209ENST00000552008 CCDC82Q8N4S0 544 aa4.16□□□□□ -1.74
LIMA1-209ENST00000552008 DLGAP3O95886 979 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 CYP2E1P05181 493 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-209ENST00000552008 NFICP08651 508 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 C1QTNF9P0C862 333 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 SOX4Q06945 474 aaPredicted RBP4.15□□□□□ -1.75
LIMA1-209ENST00000552008 DBX2Q6ZNG2 339 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 FLAD1Q8NFF5 587 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 UCN2Q96RP3 112 aa4.15□□□□□ -1.75
LIMA1-209ENST00000552008 NFIBO00712 420 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 RAB6AP20340 208 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 CD96P40200 585 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 EXOSC6Q5RKV6 272 aaKnown RBP4.14□□□□□ -1.75
LIMA1-209ENST00000552008 HDGFL1Q5TGJ6 251 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 GLMNQ92990 594 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 RELTQ969Z4 430 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 LIN37Q96GY3 246 aaPredicted RBP4.14□□□□□ -1.75
LIMA1-209ENST00000552008 C1orf115Q9H7X2 142 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.14□□□□□ -1.75
LIMA1-209ENST00000552008 CRIM1Q9NZV1 1036 aa4.14□□□□□ -1.75
LIMA1-209ENST00000552008 POM121CA8CG34 1229 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 HOXA5P20719 270 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 DPYDQ12882 1025 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 OGFOD3Q6PK18 319 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 ETFBKMTQ8IXQ9 262 aa4.13□□□□□ -1.75
LIMA1-209ENST00000552008 PLD6Q8N2A8 252 aaKnown RBP4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms