RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PRKAR2BP31323 418 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 NBPF9Q3BBW0 867 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 LDLRAD1Q5T700 205 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 TBC1D16Q8TBP0 767 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 SHISA4Q96DD7 197 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 GMLQ99445 158 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.6□□□□□ -1.03
CD44-237ENST00000534082 STXBP5LQ9Y2K9 1186 aa8.6□□□□□ -1.03
CD44-237ENST00000534082 DCTN1Q14203 1278 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 SH3TC2Q8TF17 1288 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 CELF1Q92879 486 aaKnown RBP8.59□□□□□ -1.03
CD44-237ENST00000534082 WNK4Q96J92 1243 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 HTATIP2Q9BUP3 242 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 ZC3H12CQ9C0D7 883 aaKnown RBP8.59□□□□□ -1.03
CD44-237ENST00000534082 ANGEL1Q9UNK9 670 aaKnown RBP8.59□□□□□ -1.03
CD44-237ENST00000534082 NR2E3Q9Y5X4 410 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 PSME4Q14997 1843 aa8.59□□□□□ -1.03
CD44-237ENST00000534082 SH3TC1Q8TE82 1336 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 ZNF316A6NFI3 1004 aaPredicted RBP8.58□□□□□ -1.04
CD44-237ENST00000534082 ZBTB7BO15156 539 aaPredicted RBP8.58□□□□□ -1.04
CD44-237ENST00000534082 OTUD7BQ6GQQ9 843 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 ANKRD13DQ6ZTN6 518 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 NLRP10Q86W26 655 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.58□□□□□ -1.04
CD44-237ENST00000534082 DEFB123Q8N688 67 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 SLC10A4Q96EP9 437 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 CLMNQ96JQ2 1002 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 RSPH6AQ9H0K4 717 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 MIS18AQ9NYP9 233 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 TRMT112Q9UI30 125 aaKnown RBP8.58□□□□□ -1.04
CD44-237ENST00000534082 FZD1Q9UP38 647 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 PCDHGA4Q9Y5G9 962 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 MUC3AQ02505 3323 aa8.58□□□□□ -1.04
CD44-237ENST00000534082 ERBB4Q15303 1308 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 EYSQ5T1H1 3165 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 UFL1O94874 794 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 SASH1O94885 1247 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 MMRN1Q13201 1228 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 ARHGEF6Q15052 776 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 TAF7Q15545 349 aaPredicted RBP8.57□□□□□ -1.04
CD44-237ENST00000534082 Q7L0L9 218 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 PLPP6Q8IY26 295 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 PRDM6Q9NQX0 595 aa8.57□□□□□ -1.04
CD44-237ENST00000534082 COL1A1P02452 1464 aaPredicted RBP8.57□□□□□ -1.04
CD44-237ENST00000534082 SSC5DA1L4H1 1573 aa8.56□□□□□ -1.04
CD44-237ENST00000534082 WNT10BO00744 389 aa8.56□□□□□ -1.04
CD44-237ENST00000534082 HSP90AB3PQ58FF7 597 aa8.56□□□□□ -1.04
CD44-237ENST00000534082 UBE2Q1Q7Z7E8 422 aa8.56□□□□□ -1.04
CD44-237ENST00000534082 APOBEC3FQ8IUX4 373 aaKnown RBP8.56□□□□□ -1.04
CD44-237ENST00000534082 THUMPD2Q9BTF0 503 aaKnown RBP8.56□□□□□ -1.04
CD44-237ENST00000534082 GPHNQ9NQX3 736 aaPredicted RBP8.56□□□□□ -1.04
CD44-237ENST00000534082 ZNF646O15015 1829 aaPredicted RBP8.55□□□□□ -1.04
CD44-237ENST00000534082 USP17L3A6NCW0 530 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 USP17L4A6NCW7 530 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 GJA5P36382 358 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 EIF4A1P60842 406 aaKnown RBP8.55□□□□□ -1.04
CD44-237ENST00000534082 DSG2Q14126 1118 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 MTFR1Q15390 333 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 USP17L1Q7RTZ2 530 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 LRP10Q7Z4F1 713 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 ZNF687Q8N1G0 1237 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 OGFOD1Q8N543 542 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 PTPN18Q99952 460 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 PODXL2Q9NZ53 605 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 STAP2Q9UGK3 403 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 GGA1Q9UJY5 639 aa8.55□□□□□ -1.04
CD44-237ENST00000534082 ZSWIM8A7E2V4 1837 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 TESPA1A2RU30 521 aaPredicted RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 HTATSF1O43719 755 aaKnown RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 GTPBP6O43824 516 aaPredicted RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 FOXK1P85037 733 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 SF3B3Q15393 1217 aaKnown RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 MAP3K11Q16584 847 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 CC2D1BQ5T0F9 858 aaKnown RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 NKX2-3Q8TAU0 364 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 PNISRQ8TF01 805 aaKnown RBP8.54□□□□□ -1.04
CD44-237ENST00000534082 ZNF428Q96B54 188 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 MTMR10Q9NXD2 777 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 ANKIB1Q9P2G1 1089 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 LHX6Q9UPM6 363 aa8.54□□□□□ -1.04
CD44-237ENST00000534082 PPP1R12BO60237 982 aaPredicted RBP8.53□□□□□ -1.04
CD44-237ENST00000534082 EVI5O60447 810 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 FARP2O94887 1054 aaPredicted RBP8.53□□□□□ -1.04
CD44-237ENST00000534082 ANXA1P04083 346 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 GJA8P48165 433 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 PDIA6Q15084 440 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 TAF1CQ15572 869 aaPredicted RBP8.53□□□□□ -1.04
CD44-237ENST00000534082 PROSER3Q2NL68 480 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 MXD3Q9BW11 206 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 ARHGAP39Q9C0H5 1083 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 ZFYVE28Q9HCC9 887 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 TTC28Q96AY4 2481 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 MYO3BQ8WXR4 1341 aa8.53□□□□□ -1.04
CD44-237ENST00000534082 UNCXA6NJT0 531 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 GJB1P08034 283 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 HSPA5P11021 654 aaKnown RBP8.52□□□□□ -1.05
CD44-237ENST00000534082 RPS8P62241 208 aaKnown RBP8.52□□□□□ -1.05
CD44-237ENST00000534082 DACT2Q5SW24 774 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 PODNQ7Z5L7 613 aa8.52□□□□□ -1.05
CD44-237ENST00000534082 FBXW7Q969H0 707 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms