RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 STOX1Q6ZVD7 989 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 VSTM4Q8IW00 320 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 HAUS7Q99871 368 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 TRIM34Q9BYJ4 488 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 HSD3B7Q9H2F3 369 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 RASSF4Q9H2L5 321 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 TUBE1Q9UJT0 475 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 MRFAP1Q9Y605 127 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 CCDC151A5D8V7 595 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 VWA3AA6NCI4 1184 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 SPTLC2O15270 562 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 FANCGO15287 622 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 ZNF202O95125 648 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 ANXA1P04083 346 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 MYL5Q02045 173 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 BRD3Q15059 726 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 STK38Q15208 465 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 SF3A1Q15459 793 aaKnown RBP11.19□□□□□ -0.62
SYNE1-230ENST00000495090 GORABQ5T7V8 394 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 CTR9Q6PD62 1173 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 FBXO18Q8NFZ0 1043 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 FUT8Q9BYC5 575 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 LGR6Q9HBX8 967 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 HELLSQ9NRZ9 838 aa11.19□□□□□ -0.62
SYNE1-230ENST00000495090 PHRF1Q9P1Y6 1649 aaKnown RBP11.18□□□□□ -0.62
SYNE1-230ENST00000495090 KCNQ3O43525 872 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 SEC31AO94979 1220 aaKnown RBP11.18□□□□□ -0.62
SYNE1-230ENST00000495090 PDIA3P30101 505 aaKnown RBP11.18□□□□□ -0.62
SYNE1-230ENST00000495090 UBASH3AP57075 661 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 TUBB4BP68371 445 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 ST5P78524 1137 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 APOBRQ0VD83 1088 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 TNNI3KQ59H18 835 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 TMEM139Q8IV31 216 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 HNRNPLLQ8WVV9 542 aaKnown RBP11.18□□□□□ -0.62
SYNE1-230ENST00000495090 DBNLQ9UJU6 430 aaKnown RBP11.18□□□□□ -0.62
SYNE1-230ENST00000495090 PPP2R2CQ9Y2T4 447 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 FPGT-TNNI3KV9GXZ4 949 aa11.18□□□□□ -0.62
SYNE1-230ENST00000495090 FAM237AA0A1B0GTK4 181 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 MAP2K7O14733 419 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 STX10O60499 249 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 CASQ1P31415 396 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 PPP2R3AQ06190 1150 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 KBTBD3Q8NAB2 608 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 NFATC2IPQ8NCF5 419 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 GOLGA1Q92805 767 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 ERCC4Q92889 916 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 DDX21Q9NR30 783 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 POTEB2H3BUK9 544 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 RPS6KA5O75582 802 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 TOP1P11387 765 aaKnown RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 FDPSP14324 419 aaKnown RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 LMOD1P29536 600 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 AXDND1Q5T1B0 1012 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 MYSM1Q5VVJ2 828 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 IP6K1Q92551 441 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 SYTL4Q96C24 671 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 EDC3Q96F86 508 aaKnown RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 UTP14AQ9BVJ6 771 aaKnown RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 LRRC2Q9BYS8 371 aa11.17□□□□□ -0.62
SYNE1-230ENST00000495090 RGPD8O14715 1765 aaPredicted RBP11.17□□□□□ -0.62
SYNE1-230ENST00000495090 LTN1O94822 1766 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 MYO1CO00159 1063 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 DHX16O60231 1041 aaKnown RBP11.16□□□□□ -0.62
SYNE1-230ENST00000495090 SERPINC1P01008 464 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 IVLP07476 585 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 TXLNAP40222 546 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 TBX2Q13207 712 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-230ENST00000495090 TUBB2AQ13885 445 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 PROSER3Q2NL68 480 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 AMOTQ4VCS5 1084 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 CCDC129Q6ZRS4 1044 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 ELOA2Q8IYF1 753 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-230ENST00000495090 CCDC191Q8NCU4 936 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 KIFC2Q96AC6 838 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 TUBB2BQ9BVA1 445 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 PARD6BQ9BYG5 372 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 SIL1Q9H173 461 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 ATG3Q9NT62 314 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 CLIC4Q9Y696 253 aa11.16□□□□□ -0.62
SYNE1-230ENST00000495090 SIPA1L3O60292 1781 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-230ENST00000495090 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 E7EWF7 191 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 IGKV5-2P06315 115 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ATP1A3P13637 1013 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 PFKFB1P16118 471 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ACTN2P35609 894 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 USP5P45974 858 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 RFX5P48382 616 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 CCT2P78371 535 aaKnown RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 CFAP100Q494V2 611 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 PLEKHO1Q53GL0 409 aaPredicted RBP11.15□□□□□ -0.62
SYNE1-230ENST00000495090 SRLQ86TD4 932 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 OSCARQ8IYS5 282 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ANKRD24Q8TF21 1146 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 FBXW7Q969H0 707 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 ADAM21Q9UKJ8 722 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 HPSEQ9Y251 543 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 NEURL1BA8MQ27 555 aa11.15□□□□□ -0.62
SYNE1-230ENST00000495090 RNMTO43148 476 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms