RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 PDE8AO60658 829 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 PDE8BO95263 885 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 APPP05067 770 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 FDPSP14324 419 aaKnown RBP13.15□□□□□ -0.3
CHMP3-209ENST00000494623 OTUD7BQ6GQQ9 843 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 USP28Q96RU2 1077 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 KLF18A0A0U1RQI7 1052 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 RALYLQ86SE5 291 aaKnown RBP13.14□□□□□ -0.31
CHMP3-209ENST00000494623 CCAR1Q8IX12 1150 aaKnown RBP13.14□□□□□ -0.31
CHMP3-209ENST00000494623 NCOA7Q8NI08 942 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 CBX8Q9HC52 389 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 PIH1D3Q9NQM4 214 aaKnown RBP13.14□□□□□ -0.31
CHMP3-209ENST00000494623 RCOR1Q9UKL0 485 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 BCL9O00512 1426 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 RIC1Q4ADV7 1423 aa13.14□□□□□ -0.31
CHMP3-209ENST00000494623 ZNF396Q96N95 335 aaPredicted RBP13.14□□□□□ -0.31
CHMP3-209ENST00000494623 ADD2P35612 726 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 PHKA1P46020 1223 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 DNTTIP2Q5QJE6 756 aaKnown RBP13.13□□□□□ -0.31
CHMP3-209ENST00000494623 CCDC102BQ68D86 513 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 ZSCAN25Q6NSZ9 544 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 MB21D2Q8IYB1 491 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-209ENST00000494623 C17orf53Q8N3J3 647 aaPredicted RBP13.13□□□□□ -0.31
CHMP3-209ENST00000494623 CHMP4CQ96CF2 233 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 SALL1Q9NSC2 1324 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 CARMIL3Q8ND23 1372 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 GOLGA8BA8MQT2 603 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 ANTXR2P58335 489 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 VGLL2Q8N8G2 317 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 DENND2AQ9ULE3 1009 aa13.13□□□□□ -0.31
CHMP3-209ENST00000494623 IL6STP40189 918 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ME1P48163 572 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 EVCP57679 992 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 TTF1Q15361 905 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 RBM43Q6ZSC3 357 aaKnown RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 UBN2Q6ZU65 1347 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 FBXL16Q8N461 479 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 SPEF2Q9C093 1822 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 DNAJC25Q9H1X3 360 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 TAOK2Q9UL54 1235 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ZNF532Q9HCE3 1301 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ERVV-1B6SEH8 477 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 SNAP23O00161 211 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 CPLX1O14810 134 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 TRDNQ13061 729 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 POLR3DP05423 398 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 NOLC1Q14978 699 aaKnown RBP eCLIP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 SUSD4Q5VX71 490 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ZNF34Q8IZ26 560 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 C8orf76Q96K31 380 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 GOLPH3LQ9H4A5 285 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 GJB4Q9NTQ9 266 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ORC3Q9UBD5 711 aaPredicted RBP13.12□□□□□ -0.31
CHMP3-209ENST00000494623 HPS5Q9UPZ3 1129 aa13.12□□□□□ -0.31
CHMP3-209ENST00000494623 ABCC12Q96J65 1359 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 DHX16O60231 1041 aaKnown RBP13.11□□□□□ -0.31
CHMP3-209ENST00000494623 ZNF165P49910 485 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 PIBF1Q8WXW3 757 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 ACSBG1Q96GR2 724 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 ZNF512BQ96KM6 892 aaPredicted RBP13.11□□□□□ -0.31
CHMP3-209ENST00000494623 WWC3Q9ULE0 1092 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 ITGB4P16144 1822 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 CCDC73Q6ZRK6 1079 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 NKX2-3Q8TAU0 364 aa13.11□□□□□ -0.31
CHMP3-209ENST00000494623 PDE6AP16499 860 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 TERF1P54274 439 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 UBE3CQ15386 1083 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 PUM3Q15397 648 aaKnown RBP13.1□□□□□ -0.31
CHMP3-209ENST00000494623 ATL3Q6DD88 541 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 DRC7Q8IY82 874 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 LPIN2Q92539 896 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 NBPF3Q9H094 633 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 DISP2A7MBM2 1401 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 UQCRFS1P1P0C7P4 283 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 TBC1D10CQ8IV04 446 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 FSIP1Q8NA03 581 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 MPHOSPH8Q99549 860 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 TRIM5Q9C035 493 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 INCENPQ9NQS7 918 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 SEC31BQ9NQW1 1179 aa13.1□□□□□ -0.31
CHMP3-209ENST00000494623 GOLGA6L6A8MZA4 724 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 ADAMTS2O95450 1211 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 RXRAP19793 462 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 ATP6V1AP38606 617 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 SNW1Q13573 536 aaKnown RBP13.09□□□□□ -0.31
CHMP3-209ENST00000494623 CYB5R4Q7L1T6 521 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 AIDAQ96BJ3 306 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 NWD2Q9ULI1 1742 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 MROH5Q6ZUA9 1318 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 UQCRHLA0A096LP55 91 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 KINO60870 393 aaKnown RBP13.09□□□□□ -0.31
CHMP3-209ENST00000494623 UQCRHP07919 91 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 ARID4AP29374 1257 aaPredicted RBP13.09□□□□□ -0.31
CHMP3-209ENST00000494623 SF3A1Q15459 793 aaKnown RBP13.09□□□□□ -0.31
CHMP3-209ENST00000494623 INTS5Q6P9B9 1019 aaKnown RBP13.09□□□□□ -0.31
CHMP3-209ENST00000494623 KCNF1Q9H3M0 494 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 PCDHA7Q9UN72 937 aa13.09□□□□□ -0.31
CHMP3-209ENST00000494623 CLIC4Q9Y696 253 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms