RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 ABCD1P33897 745 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 TNIP1Q15025 636 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 SNX21Q969T3 373 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 DDX41Q9UJV9 622 aaKnown RBP10.1□□□□□ -0.79
COL6A3-210ENST00000473258 SURF6O75683 361 aaKnown RBP10.1□□□□□ -0.79
COL6A3-210ENST00000473258 HVCN1Q96D96 273 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 HELLSQ9NRZ9 838 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 EXOC1Q9NV70 894 aa10.1□□□□□ -0.79
COL6A3-210ENST00000473258 AATFQ9NY61 560 aaKnown RBP eCLIP10.1□□□□□ -0.79
COL6A3-210ENST00000473258 DHX29Q7Z478 1369 aaKnown RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 EVI5O60447 810 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 SNUPNO95149 360 aaKnown RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 RIPK4P57078 832 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 IKQ13123 557 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 FLOT2Q14254 428 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 FLCNQ8NFG4 579 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 SIL1Q9H173 461 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 ZRANB2O95218 330 aaKnown RBP eCLIP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 GNAI1P63096 354 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 PAK2Q13177 524 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 C16orf87Q6PH81 154 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 CFAP61Q8NHU2 1237 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 RRP36Q96EU6 259 aaKnown RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 TRIM11Q96F44 468 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 DACT1Q9NYF0 836 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 ABCF2Q9UG63 623 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 LAMB3Q13751 1172 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 USP37Q86T82 979 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 SMC5Q8IY18 1101 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 USP33Q8TEY7 942 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 TMEM51Q9NW97 253 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 RAD21O60216 631 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 UBTFL1P0CB47 393 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 INAQ16352 499 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 HHATQ5VTY9 493 aa10.09□□□□□ -0.79
COL6A3-210ENST00000473258 NAIF1Q69YI7 327 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-210ENST00000473258 ZSCAN22P10073 491 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 ERCC5P28715 1186 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 MRPS15P82914 257 aaKnown RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 TMCO5AQ8N6Q1 288 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 ATP6V0A1Q93050 837 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 ITGB1BP2Q9UKP3 347 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 IQCA1LA6NCM1 817 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 KRT10P13645 584 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 KRT13P13646 458 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 CCDC15Q0P6D6 951 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 WASF1Q92558 559 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 HSPA1LP34931 641 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 CALCOCO2Q13137 446 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 JAKMIP2Q96AA8 810 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 MRPL46Q9H2W6 279 aaKnown RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 IFNKQ9P0W0 207 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 LMOD1P29536 600 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 ATP1A2P50993 1020 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 MTMR3Q13615 1198 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 SEPT2Q15019 361 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 NANOGNBQ7Z5D8 188 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 HELBQ8NG08 1087 aaPredicted RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 CCDC26Q8TAB7 109 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 KLHL29Q96CT2 875 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 FMN1Q68DA7 1419 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 RAB11FIP3O75154 756 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 EEF1DP29692 281 aaKnown RBP10.08□□□□□ -0.8
COL6A3-210ENST00000473258 OSCARQ8IYS5 282 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 CCDC197Q8NCU1 140 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 LMBR1Q8WVP7 490 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 PARVBQ9HBI1 364 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 ANLNQ9NQW6 1124 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 GIMAP4Q9NUV9 329 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 SAMM50Q9Y512 469 aa10.08□□□□□ -0.8
COL6A3-210ENST00000473258 INPP1P49441 399 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 KANK3Q6NY19 840 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 CASP10Q92851 521 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 GPR101Q96P66 508 aaPredicted RBP10.07□□□□□ -0.8
COL6A3-210ENST00000473258 COQ7Q99807 217 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 KRT7P08729 469 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 ECE1P42892 770 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 SF3A3Q12874 501 aaKnown RBP eCLIP10.07□□□□□ -0.8
COL6A3-210ENST00000473258 ZNF653Q96CK0 615 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 ADAMTS8Q9UP79 889 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 CEP164Q9UPV0 1460 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 MAP3K7O43318 606 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 KRT71Q3SY84 523 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 CCDC25Q86WR0 208 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 TMEM232C9JQI7 657 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 ATP2B3Q16720 1220 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 FAM133BQ5BKY9 247 aaKnown RBP10.07□□□□□ -0.8
COL6A3-210ENST00000473258 C1orf115Q9H7X2 142 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 ETAA1Q9NY74 926 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 CNPY2Q9Y2B0 182 aa10.07□□□□□ -0.8
COL6A3-210ENST00000473258 DKC1O60832 514 aaKnown RBP eCLIP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 PDE6BP35913 854 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ACTN3Q08043 901 aaPredicted RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 SAFB2Q14151 953 aaKnown RBP eCLIP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 OLFML1Q6UWY5 402 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 SRLQ86TD4 932 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 OLFM3Q96PB7 478 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 TTF2Q9UNY4 1162 aaKnown RBP10.06□□□□□ -0.8
COL6A3-210ENST00000473258 AKAP2Q9Y2D5 859 aa10.06□□□□□ -0.8
COL6A3-210ENST00000473258 ANKRD65E5RJM6 399 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms