RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-204	ENST00000431283	ICMT	O60725	284 aa		9.21	□□□□□ -0.94
PTPN4-204	ENST00000431283	RUSC1	Q9BVN2	902 aa		9.21	□□□□□ -0.94
PTPN4-204	ENST00000431283	SOX13	Q9UN79	622 aa		9.21	□□□□□ -0.94
PTPN4-204	ENST00000431283	ADAM11	O75078	769 aa		9.2	□□□□□ -0.94
PTPN4-204	ENST00000431283	ZFYVE28	Q9HCC9	887 aa		9.2	□□□□□ -0.94
PTPN4-204	ENST00000431283	HYAL3	O43820	417 aa	Predicted RBP	9.19	□□□□□ -0.94
PTPN4-204	ENST00000431283	EIF4EBP3	O60516	100 aa	Predicted RBP	9.19	□□□□□ -0.94
PTPN4-204	ENST00000431283	KCNF1	Q9H3M0	494 aa		9.19	□□□□□ -0.94
PTPN4-204	ENST00000431283	GAS2	O43903	313 aa	Known RBP	9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	IGLV1-40	P01703	118 aa		9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	SERPINB4	P48594	390 aa		9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	FAM46A	Q96IP4	442 aa	Known RBP	9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	MYRFL	Q96LU7	910 aa		9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	USP26	Q9BXU7	913 aa		9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	BHLHE41	Q9C0J9	482 aa	Predicted RBP	9.18	□□□□□ -0.94
PTPN4-204	ENST00000431283	TM4SF5	O14894	197 aa		9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	POLR3D	P05423	398 aa	Predicted RBP	9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	PDE3B	Q13370	1112 aa		9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	NUTM2G	Q5VZR2	741 aa		9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	LATS2	Q9NRM7	1088 aa		9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	PCMTD2	Q9NV79	361 aa		9.17	□□□□□ -0.94
PTPN4-204	ENST00000431283	SUPT5H	O00267	1087 aa	Known RBP	9.16	□□□□□ -0.94
PTPN4-204	ENST00000431283	SOX1	O00570	391 aa	Predicted RBP	9.16	□□□□□ -0.94
PTPN4-204	ENST00000431283	VN1R5	Q7Z5H4	357 aa		9.16	□□□□□ -0.94
PTPN4-204	ENST00000431283	ARMC10	Q8N2F6	343 aa		9.16	□□□□□ -0.94
PTPN4-204	ENST00000431283	TMC1	Q8TDI8	760 aa		9.16	□□□□□ -0.94
PTPN4-204	ENST00000431283	BMP3	P12645	472 aa		9.15	□□□□□ -0.94
PTPN4-204	ENST00000431283	GSTM4	Q03013	218 aa		9.15	□□□□□ -0.94
PTPN4-204	ENST00000431283	SOX17	Q9H6I2	414 aa	Predicted RBP	9.15	□□□□□ -0.94
PTPN4-204	ENST00000431283	CYP4F12	Q9HCS2	524 aa		9.15	□□□□□ -0.94
PTPN4-204	ENST00000431283	HIF3A	Q9Y2N7	669 aa		9.15	□□□□□ -0.94
PTPN4-204	ENST00000431283	NFIA	Q12857	509 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	PEAR1	Q5VY43	1037 aa	Predicted RBP	9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	BEND4	Q6ZU67	534 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	CLEC10A	Q8IUN9	316 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	TRIM42	Q8IWZ5	723 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	FAM20C	Q8IXL6	584 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	C12orf50	Q8NA57	414 aa	Predicted RBP	9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	CCER1	Q8TC90	406 aa	Predicted RBP	9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	C7orf69	Q9H7B7	122 aa		9.14	□□□□□ -0.95
PTPN4-204	ENST00000431283	MEGF11	A6BM72	1044 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	SSTR4	P31391	388 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	GRIK1	P39086	918 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	PREP	P48147	710 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	HGSNAT	Q68CP4	663 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	DDX54	Q8TDD1	881 aa	Known RBP	9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	LIN7B	Q9HAP6	207 aa		9.13	□□□□□ -0.95
PTPN4-204	ENST00000431283	HMX2	A2RU54	273 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	ESRRA	P11474	423 aa	Predicted RBP	9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	RXRB	P28702	533 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	RNF43	Q68DV7	783 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	GALNT12	Q8IXK2	581 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	RETREG2	Q8NC44	543 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	CITED4	Q96RK1	184 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283	DBNDD2	Q9BQY9	259 aa		9.12	□□□□□ -0.95
PTPN4-204	ENST00000431283		A0A096LPE4	126 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283		A0A1W2PP55	124 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283		A0A1W2PPZ6	126 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	METTL12	A8MUP2	240 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	COBL	O75128	1261 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	GIMAP7	Q8NHV1	300 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	FAM83C	Q9BQN1	747 aa		9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	CLEC4M	Q9H2X3	399 aa	Predicted RBP	9.11	□□□□□ -0.95
PTPN4-204	ENST00000431283	LOC100289279	A0A1B0GTE1	492 aa		9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	CPNE3	O75131	537 aa	Known RBP	9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	PCDH1	Q08174	1060 aa		9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	CCNJL	Q8IV13	435 aa		9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	EHD4	Q9H223	541 aa		9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	ZFYVE1	Q9HBF4	777 aa		9.1	□□□□□ -0.95
PTPN4-204	ENST00000431283	CYP11A1	P05108	521 aa		9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	USP11	P51784	963 aa		9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	ARHGAP4	P98171	946 aa		9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	EXOSC6	Q5RKV6	272 aa	Known RBP	9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	SMG8	Q8ND04	991 aa	Known RBP	9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	TMPRSS13	Q9BYE2	586 aa		9.09	□□□□□ -0.95
PTPN4-204	ENST00000431283	TGFB1	P01137	390 aa		9.08	□□□□□ -0.96
PTPN4-204	ENST00000431283	MAP4	P27816	1152 aa	Known RBP	9.08	□□□□□ -0.96
PTPN4-204	ENST00000431283	INTS5	Q6P9B9	1019 aa	Known RBP	9.08	□□□□□ -0.96
PTPN4-204	ENST00000431283	YIPF2	Q9BWQ6	316 aa		9.08	□□□□□ -0.96
PTPN4-204	ENST00000431283	SUGCT	Q9HAC7	445 aa		9.08	□□□□□ -0.96
PTPN4-204	ENST00000431283	TXNDC2	Q86VQ3	553 aa		9.07	□□□□□ -0.96
PTPN4-204	ENST00000431283	ZDHHC13	Q8IUH4	622 aa		9.07	□□□□□ -0.96
PTPN4-204	ENST00000431283	GRIA4	P48058	902 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	CD97	P48960	835 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	ORC1	Q13415	861 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	SPRED3	Q2MJR0	410 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	KIAA0319	Q5VV43	1072 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	USPL1	Q5W0Q7	1092 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	FAM129B	Q96TA1	746 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	TCF12	Q99081	682 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	CORO1B	Q9BR76	489 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	NPHS2	Q9NP85	383 aa		9.06	□□□□□ -0.96
PTPN4-204	ENST00000431283	GADD45B	O75293	160 aa	Predicted RBP	9.05	□□□□□ -0.96
PTPN4-204	ENST00000431283	POU4F3	Q15319	338 aa		9.05	□□□□□ -0.96
PTPN4-204	ENST00000431283	ECM1	Q16610	540 aa		9.05	□□□□□ -0.96
PTPN4-204	ENST00000431283	SGO2	Q562F6	1265 aa		9.05	□□□□□ -0.96
PTPN4-204	ENST00000431283	PAOX	Q6QHF9	649 aa		9.05	□□□□□ -0.96
PTPN4-204	ENST00000431283	SHKBP1	Q8TBC3	707 aa		9.05	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms