RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 AEBP2Q6ZN18 517 aaPredicted RBP30.49■■■□□ 2.47
PTPN4-204ENST00000431283 CHIC1Q5VXU3 224 aa29.42■■■□□ 2.3
PTPN4-204ENST00000431283 SENP3Q9H4L4 574 aaPredicted RBP26.12■■□□□ 1.77
PTPN4-204ENST00000431283 PHF23Q9BUL5 403 aaPredicted RBP25.78■■□□□ 1.72
PTPN4-204ENST00000431283 FOXD1Q16676 465 aa24.2■■□□□ 1.46
PTPN4-204ENST00000431283 PLPPR3Q6T4P5 718 aa23.76■■□□□ 1.39
PTPN4-204ENST00000431283 ADRA2BP18089 450 aa22.89■■□□□ 1.25
PTPN4-204ENST00000431283 PPP6R1Q9UPN7 881 aa22.87■■□□□ 1.25
PTPN4-204ENST00000431283 PIAS4Q8N2W9 510 aaPredicted RBP22.81■■□□□ 1.24
PTPN4-204ENST00000431283 MSH5O43196 834 aa22.62■■□□□ 1.21
PTPN4-204ENST00000431283 POTEDQ86YR6 584 aa21.33■■□□□ 1.01
PTPN4-204ENST00000431283 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
PTPN4-204ENST00000431283 MAPK8IP2Q13387 824 aaPredicted RBP20.88■□□□□ 0.93
PTPN4-204ENST00000431283 PPP4R3CPQ6ZMV5 832 aa20.84■□□□□ 0.93
PTPN4-204ENST00000431283 DMRT2Q9Y5R5 561 aa20.72■□□□□ 0.91
PTPN4-204ENST00000431283 CNKSR2Q8WXI2 1034 aa20.39■□□□□ 0.85
PTPN4-204ENST00000431283 NCBP3Q53F19 620 aaKnown RBP20.28■□□□□ 0.84
PTPN4-204ENST00000431283 RNF216Q9NWF9 866 aaPredicted RBP20.09■□□□□ 0.81
PTPN4-204ENST00000431283 HOXD11P31277 338 aaPredicted RBP20.08■□□□□ 0.81
PTPN4-204ENST00000431283 DCAF8L1A6NGE4 600 aa20.01■□□□□ 0.79
PTPN4-204ENST00000431283 NPM3O75607 178 aaKnown RBP19.82■□□□□ 0.76
PTPN4-204ENST00000431283 KCNA4P22459 653 aa19.78■□□□□ 0.76
PTPN4-204ENST00000431283 DNAJC5BQ9UF47 199 aa19.34■□□□□ 0.69
PTPN4-204ENST00000431283 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.28■□□□□ 0.68
PTPN4-204ENST00000431283 RNF39Q9H2S5 420 aa19.25■□□□□ 0.67
PTPN4-204ENST00000431283 CACNB1Q02641 598 aaPredicted RBP19.2■□□□□ 0.66
PTPN4-204ENST00000431283 C1QBPQ07021 282 aaKnown RBP19.07■□□□□ 0.64
PTPN4-204ENST00000431283 SLC4A1APQ9BWU0 796 aaKnown RBP18.84■□□□□ 0.61
PTPN4-204ENST00000431283 SLC4A2P04920 1241 aa18.78■□□□□ 0.6
PTPN4-204ENST00000431283 U3KPZ7 1027 aaPredicted RBP18.78■□□□□ 0.6
PTPN4-204ENST00000431283 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.55■□□□□ 0.56
PTPN4-204ENST00000431283 HNRNPUL2Q1KMD3 747 aaKnown RBP18.55■□□□□ 0.56
PTPN4-204ENST00000431283 APLP2Q06481 763 aa18.51■□□□□ 0.55
PTPN4-204ENST00000431283 CAPN15O75808 1086 aa18.47■□□□□ 0.55
PTPN4-204ENST00000431283 SAMD1Q6SPF0 538 aaPredicted RBP18.43■□□□□ 0.54
PTPN4-204ENST00000431283 MYCNP04198 464 aaPredicted RBP18.41■□□□□ 0.54
PTPN4-204ENST00000431283 SPINK5Q9NQ38 1064 aaPredicted RBP18.4■□□□□ 0.54
PTPN4-204ENST00000431283 FOXD4L1Q9NU39 408 aa18.4■□□□□ 0.54
PTPN4-204ENST00000431283 TRHP20396 242 aaPredicted RBP18.25■□□□□ 0.51
PTPN4-204ENST00000431283 ZNF219Q9P2Y4 722 aaPredicted RBP18.24■□□□□ 0.51
PTPN4-204ENST00000431283 DSG3P32926 999 aa18.16■□□□□ 0.5
PTPN4-204ENST00000431283 ZBTB22O15209 634 aa18.11■□□□□ 0.49
PTPN4-204ENST00000431283 ABCB7O75027 752 aa18.03■□□□□ 0.48
PTPN4-204ENST00000431283 ATF5Q9Y2D1 282 aaPredicted RBP17.82■□□□□ 0.44
PTPN4-204ENST00000431283 ATXN8OSP0DMR3 200 aa17.81■□□□□ 0.44
PTPN4-204ENST00000431283 POLA2Q14181 598 aa17.81■□□□□ 0.44
PTPN4-204ENST00000431283 EHMT2Q96KQ7 1210 aa17.77■□□□□ 0.44
PTPN4-204ENST00000431283 CSRNP3Q8WYN3 585 aa17.67■□□□□ 0.42
PTPN4-204ENST00000431283 ZBTB12Q9Y330 459 aaPredicted RBP17.58■□□□□ 0.4
PTPN4-204ENST00000431283 RBM42Q9BTD8 480 aaKnown RBP17.45■□□□□ 0.38
PTPN4-204ENST00000431283 FBLN2P98095 1184 aa17.32■□□□□ 0.36
PTPN4-204ENST00000431283 OSCARQ8IYS5 282 aa17.21■□□□□ 0.35
PTPN4-204ENST00000431283 AKT1S1Q96B36 256 aa17.07■□□□□ 0.32
PTPN4-204ENST00000431283 MKRN4PQ13434 485 aaPredicted RBP17.02■□□□□ 0.32
PTPN4-204ENST00000431283 SPDYE2BA6NHP3 402 aa17■□□□□ 0.31
PTPN4-204ENST00000431283 SPDYE6P0CI01 402 aa17■□□□□ 0.31
PTPN4-204ENST00000431283 SPDYE2Q495Y8 402 aa17■□□□□ 0.31
PTPN4-204ENST00000431283 REM2Q8IYK8 340 aaPredicted RBP16.88■□□□□ 0.29
PTPN4-204ENST00000431283 ZNF692Q9BU19 519 aaPredicted RBP16.88■□□□□ 0.29
PTPN4-204ENST00000431283 CHRDL2Q6WN34 429 aa16.85■□□□□ 0.29
PTPN4-204ENST00000431283 POTEHQ6S545 545 aa16.84■□□□□ 0.29
PTPN4-204ENST00000431283 SSUH2Q9Y2M2 353 aa16.73■□□□□ 0.27
PTPN4-204ENST00000431283 PITPNM1O00562 1244 aa16.68■□□□□ 0.26
PTPN4-204ENST00000431283 SPDYE1Q8NFV5 336 aaPredicted RBP16.64■□□□□ 0.25
PTPN4-204ENST00000431283 PABPN1Q86U42 306 aaKnown RBP eCLIP16.61■□□□□ 0.25
PTPN4-204ENST00000431283 CLEC11AQ9Y240 323 aa16.61■□□□□ 0.25
PTPN4-204ENST00000431283 SPDYE4A6NLX3 237 aa16.55■□□□□ 0.24
PTPN4-204ENST00000431283 PIP4P2Q8N4L2 257 aa16.5■□□□□ 0.23
PTPN4-204ENST00000431283 FXR2P51116 673 aaKnown RBP eCLIP16.44■□□□□ 0.22
PTPN4-204ENST00000431283 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
PTPN4-204ENST00000431283 STAG3Q9UJ98 1225 aa16.31■□□□□ 0.2
PTPN4-204ENST00000431283 PRKAR2AP13861 404 aaKnown RBP16.3■□□□□ 0.2
PTPN4-204ENST00000431283 HAX1O00165 279 aa16.19■□□□□ 0.18
PTPN4-204ENST00000431283 CHADLQ6NUI6 762 aa16.16■□□□□ 0.18
PTPN4-204ENST00000431283 FKBP8Q14318 412 aa16.11■□□□□ 0.17
PTPN4-204ENST00000431283 PROM2Q8N271 834 aa16.07■□□□□ 0.16
PTPN4-204ENST00000431283 FARP1Q9Y4F1 1045 aaPredicted RBP15.98■□□□□ 0.15
PTPN4-204ENST00000431283 SP7Q8TDD2 431 aaPredicted RBP15.97■□□□□ 0.15
PTPN4-204ENST00000431283 CREBZFQ9NS37 354 aa15.95■□□□□ 0.14
PTPN4-204ENST00000431283 C19orf67A6NJJ6 358 aa15.9■□□□□ 0.14
PTPN4-204ENST00000431283 PLEKHG5O94827 1062 aa15.87■□□□□ 0.13
PTPN4-204ENST00000431283 EVX2Q03828 476 aa15.83■□□□□ 0.12
PTPN4-204ENST00000431283 NPM1P06748 294 aaKnown RBP eCLIP15.82■□□□□ 0.12
PTPN4-204ENST00000431283 CD44P16070 742 aaKnown RBP15.82■□□□□ 0.12
PTPN4-204ENST00000431283 MIER1Q8N108 512 aa15.8■□□□□ 0.12
PTPN4-204ENST00000431283 PLCD3Q8N3E9 789 aa15.75■□□□□ 0.11
PTPN4-204ENST00000431283 FBXO3Q9UK99 471 aa15.75■□□□□ 0.11
PTPN4-204ENST00000431283 PAK3O75914 559 aaPredicted RBP15.73■□□□□ 0.11
PTPN4-204ENST00000431283 MNX1P50219 401 aaPredicted RBP15.67■□□□□ 0.1
PTPN4-204ENST00000431283 ZRANB1Q9UGI0 708 aa15.67■□□□□ 0.1
PTPN4-204ENST00000431283 ZBTB47Q9UFB7 747 aaPredicted RBP15.63■□□□□ 0.09
PTPN4-204ENST00000431283 GABBR2O75899 941 aa15.59■□□□□ 0.09
PTPN4-204ENST00000431283 CLCN6P51797 869 aa15.58■□□□□ 0.08
PTPN4-204ENST00000431283 ZNF579Q8NAF0 562 aaKnown RBP15.54■□□□□ 0.08
PTPN4-204ENST00000431283 TSPYL2Q9H2G4 693 aaPredicted RBP15.49■□□□□ 0.07
PTPN4-204ENST00000431283 VASPP50552 380 aaPredicted RBP15.46■□□□□ 0.07
PTPN4-204ENST00000431283 PHF12Q96QT6 1004 aa15.42■□□□□ 0.06
PTPN4-204ENST00000431283 KLHL34Q8N239 644 aa15.41■□□□□ 0.06
PTPN4-204ENST00000431283 RASEFQ8IZ41 740 aa15.37■□□□□ 0.05
PTPN4-204ENST00000431283 DCBLD2Q96PD2 775 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms