RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 NDUFB7P17568 137 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 LCN2P80188 198 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 CYB5R2Q6BCY4 276 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 OR8H2Q8N162 312 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 FAM89BQ8N5H3 189 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 LGALS14Q8TCE9 139 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 KCTD12Q96CX2 325 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 MSI2Q96DH6 328 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 POLR3KQ9Y2Y1 108 aaPredicted RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 ETV7Q9Y603 341 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 FLNAP21333 2647 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 TRAV24A0A0B4J272 114 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 KIAA1324LA8MWY0 1029 aaPredicted RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 MSMBP08118 114 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 FUT3P21217 361 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 SOX6P35712 828 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 EFNB2P52799 333 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 PLA2G7Q13093 441 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 GRK1Q15835 563 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 PAN3Q58A45 887 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 ATAD3CQ5T2N8 411 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 METAP1DQ6UB28 335 aaPredicted RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 FGFRL1Q8N441 504 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 OR4S1Q8NGB4 309 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 DGCR14Q96DF8 476 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 NICN1Q9BSH3 213 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 CHST6Q9GZX3 395 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 LPAR2Q9HBW0 351 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 ZNF581Q9P0T4 197 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 RCC2Q9P258 522 aaKnown RBP14.2□□□□□ -0.14
LIG1-204ENST00000542460 SPATA2Q9UM82 520 aa14.2□□□□□ -0.14
LIG1-204ENST00000542460 ZFHX3Q15911 3703 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 LOC105371242A0A075B767 164 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 METTL21EPA6NDL7 271 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 A6NHS1 94 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 MGST3O14880 152 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 ZNF182P17025 639 aaPredicted RBP14.19□□□□□ -0.14
LIG1-204ENST00000542460 OR3A1P47881 315 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 BTN2A1Q7KYR7 527 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 GDPD3Q7L5L3 318 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 SUMF2Q8NBJ7 301 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 OR56B1Q8NGI3 324 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 DYNC2LI1Q8TCX1 351 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 ACOT12Q8WYK0 555 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 AP3S1Q92572 193 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 NEDD4LQ96PU5 975 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 DPCDQ9BVM2 203 aaPredicted RBP14.19□□□□□ -0.14
LIG1-204ENST00000542460 PPA2Q9H2U2 334 aa14.19□□□□□ -0.14
LIG1-204ENST00000542460 PPIAL4CA0A0B4J2A2 164 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 PDCD6O75340 191 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 TGFAP01135 160 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 CSN2P05814 226 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 GLAP06280 429 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 BLVRBP30043 206 aaPredicted RBP14.18□□□□□ -0.14
LIG1-204ENST00000542460 KCNJ3P48549 501 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 VEGFCP49767 419 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 DYNC1I2Q13409 638 aaKnown RBP14.18□□□□□ -0.14
LIG1-204ENST00000542460 SIGIRRQ6IA17 410 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 RAB12Q6IQ22 244 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 BPIFB2Q8N4F0 458 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 OR5H6Q8NGV6 325 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 H1FXQ92522 213 aaKnown RBP14.18□□□□□ -0.14
LIG1-204ENST00000542460 DCTN5Q9BTE1 182 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 PEX16Q9Y5Y5 336 aa14.18□□□□□ -0.14
LIG1-204ENST00000542460 TRBV23-1A0A0A0MS06 115 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 A0A0A6YYD4 124 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 TRAV20A0A0B4J274 112 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 MCRIP1C9JLW8 97 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 HSPB6O14558 160 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 ERP29P30040 261 aaKnown RBP14.17□□□□□ -0.14
LIG1-204ENST00000542460 RIPPLY3P57055 190 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 RBM39Q14498 530 aaKnown RBP14.17□□□□□ -0.14
LIG1-204ENST00000542460 RAB40AQ8WXH6 277 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 TMEM186Q96B77 213 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 ATG5Q9H1Y0 275 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 RHBDL2Q9NX52 303 aa14.17□□□□□ -0.14
LIG1-204ENST00000542460 RPUSD1Q9UJJ7 312 aaKnown RBP14.17□□□□□ -0.14
LIG1-204ENST00000542460 FUOMA2VDF0 154 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 VGLL3A8MV65 326 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 C22orf46C9J442 243 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 SOCS1O15524 211 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 CHATP28329 748 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 DVL1P1P54792 670 aaPredicted RBP14.16□□□□□ -0.14
LIG1-204ENST00000542460 EDDM3BP56851 147 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 PAX2Q02962 417 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 EDDM3AQ14507 147 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 NKAPLQ5M9Q1 402 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 MZT2AQ6P582 158 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 BRICD5Q6PL45 260 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 GLCCI1Q86VQ1 547 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 NEK7Q8TDX7 302 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 DMRTB1Q96MA1 342 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 MMP26Q9NRE1 261 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 PLEKHJ1Q9NW61 149 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 HIF1ANQ9NWT6 349 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 CCDC59Q9P031 241 aaKnown RBP14.16□□□□□ -0.14
LIG1-204ENST00000542460 CR1P17927 2039 aa14.16□□□□□ -0.14
LIG1-204ENST00000542460 IGHV2-70DA0A0C4DH43 119 aa14.15□□□□□ -0.14
LIG1-204ENST00000542460 KIR2DS1A0A191URI9 304 aa14.15□□□□□ -0.14
LIG1-204ENST00000542460 FOXI3A8MTJ6 420 aaPredicted RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms