RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RHBDL2Q9NX52 303 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 COMMD3Q9UBI1 195 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 PCDHB10Q9UN67 800 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 SIGLEC5O15389 551 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 ADAM20O43506 726 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 OR7C1O76099 320 aaPredicted RBP17.21■□□□□ 0.35
CLN3-212ENST00000564574 OR2H2O95918 312 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 ZNF44P15621 663 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 AMY2BP19961 511 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 GABRR1P24046 479 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 DUSP1P28562 367 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 EFNB2P52799 333 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 IL13RA1P78552 427 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 PLA2G7Q13093 441 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 NLRC3Q7RTR2 1065 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 SAMD12Q8N8I0 201 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 MCFD2Q8NI22 146 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 PPP1R35Q8TAP8 253 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 RAB40AQ8WXH6 277 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 CCL13Q99616 98 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 ABCG5Q9H222 651 aa17.21■□□□□ 0.35
CLN3-212ENST00000564574 PDZD2O15018 2839 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 F5H0A9 414 aaPredicted RBP17.2■□□□□ 0.34
CLN3-212ENST00000564574 TMPRSS2O15393 492 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 RPS2P15880 293 aaKnown RBP17.2■□□□□ 0.34
CLN3-212ENST00000564574 PITPNBP48739 271 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 CEBPDP49716 269 aaPredicted RBP17.2■□□□□ 0.34
CLN3-212ENST00000564574 COL10A1Q03692 680 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 LYPD2Q6UXB3 125 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 OR8B3Q8NGG8 313 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 CLDND2Q8NHS1 167 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 RAB39BQ96DA2 213 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 SLC25A38Q96DW6 304 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 NEIL1Q96FI4 390 aaPredicted RBP17.2■□□□□ 0.34
CLN3-212ENST00000564574 SNX22Q96L94 193 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 Q96MF0 132 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 OR8B2Q96RD0 313 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 NICN1Q9BSH3 213 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 FAM234AQ9H0X4 552 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 ATG5Q9H1Y0 275 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 MMP27Q9H306 513 aa17.2■□□□□ 0.34
CLN3-212ENST00000564574 A0A0A6YYH2 397 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 A6NJ64 397 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 SIRPB1O00241 398 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 APOA1P02647 267 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 GLAP06280 429 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 HEXAP06865 529 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 SCN1BQ07699 218 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 CNPY1Q3B7I2 92 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 RAB12Q6IQ22 244 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 PHF21AQ96BD5 680 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 NUDT16L1Q9BRJ7 211 aaKnown RBP17.19■□□□□ 0.34
CLN3-212ENST00000564574 RCC2Q9P258 522 aaKnown RBP17.19■□□□□ 0.34
CLN3-212ENST00000564574 ADAM30Q9UKF2 790 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 MAB21L2Q9Y586 359 aa17.19■□□□□ 0.34
CLN3-212ENST00000564574 A0A0A6YYD4 124 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 FOXI3A8MTJ6 420 aaPredicted RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 SLC33A1O00400 549 aaPredicted RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 NDUFB3O43676 98 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 PDCD6O75340 191 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 ZNF737O75373 536 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 IGHV2-5P01817 119 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 WNT2P09544 360 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 FUT3P21217 361 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 USF1P22415 310 aaPredicted RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 VEGFCP49767 419 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 NPY4RP50391 375 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 PDCD1Q15116 288 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 ATAD3CQ5T2N8 411 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 FAM216BQ8N7L0 139 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 ASCC1Q8N9N2 400 aaKnown RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 OR5D13Q8NGL4 314 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 S100A16Q96FQ6 103 aaKnown RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 NEDD4LQ96PU5 975 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 C6orf62Q9GZU0 229 aaPredicted RBP17.18■□□□□ 0.34
CLN3-212ENST00000564574 NARFLQ9H6Q4 476 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 CTSZQ9UBR2 303 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 METRNQ9UJH8 293 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 HSF4Q9ULV5 492 aa17.18■□□□□ 0.34
CLN3-212ENST00000564574 DOCK11Q5JSL3 2073 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 TRAV24A0A0B4J272 114 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 IGHV4-61A0A0C4DH41 118 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 K7N7A8 449 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 RAB27BO00194 218 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 TFF1P04155 84 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 BLVRBP30043 206 aaPredicted RBP17.17■□□□□ 0.34
CLN3-212ENST00000564574 KCNJ3P48549 501 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 LMO4P61968 165 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 LOXL1Q08397 574 aaPredicted RBP17.17■□□□□ 0.34
CLN3-212ENST00000564574 RBM39Q14498 530 aaKnown RBP17.17■□□□□ 0.34
CLN3-212ENST00000564574 ARL6IP1Q15041 203 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 PAN3Q58A45 887 aaKnown RBP17.17■□□□□ 0.34
CLN3-212ENST00000564574 LRRC10Q5BKY1 277 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 SIGIRRQ6IA17 410 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 CMTM4Q8IZR5 234 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 SUMF2Q8NBJ7 301 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 OR10R2Q8NGX6 335 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 DIABLOQ9NR28 239 aa17.17■□□□□ 0.34
CLN3-212ENST00000564574 CSMD1Q96PZ7 3565 aa17.16■□□□□ 0.34
CLN3-212ENST00000564574 A0A096LNT2 108 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms