RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 CNN3Q15417 329 aaKnown RBP13.23□□□□□ -0.29
COL9A3-208ENST00000469802 SLC35E4Q6ICL7 350 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 FDX2Q6P4F2 183 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 OR8H2Q8N162 312 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 DNAAF1Q8NEP3 725 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 OR2G2Q8NGZ5 317 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 PPP1R35Q8TAP8 253 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 PP6455Q8WZ26 134 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 UBE2FQ969M7 185 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 SLAMF9Q96A28 289 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 TCF7L1Q9HCS4 588 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 GNG8Q9UK08 70 aa13.23□□□□□ -0.29
COL9A3-208ENST00000469802 IGKV1-9A0A0C4DH69 117 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 VGLL3A8MV65 326 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ODF3BA8MYP8 253 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 EI24O14681 340 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ENTPD6O75354 484 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ISG15P05161 165 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 CHRM2P08172 466 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 PIPP12273 146 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 COX7A1P24310 79 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 PAX6P26367 422 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 NANOS3P60323 173 aaKnown RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 SNRPGP62308 76 aaKnown RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ACTC1P68032 377 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ACTA1P68133 377 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ZNF782Q6ZMW2 699 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 SLC25A26Q70HW3 274 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 RDH10Q8IZV5 341 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ASCC1Q8N9N2 400 aaKnown RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 PIFOQ8TCI5 191 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ADAT3Q96EY9 351 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 BORCS8Q96FH0 119 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 ADI1Q9BV57 179 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 RANBP3Q9H6Z4 567 aaPredicted RBP13.22□□□□□ -0.29
COL9A3-208ENST00000469802 IMPAD1Q9NX62 359 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 IL36RNQ9UBH0 155 aa13.22□□□□□ -0.29
COL9A3-208ENST00000469802 TMEM82A0PJX8 343 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 CHST1O43916 411 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 TSPAN15O95858 294 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 ZNF728P0DKX0 622 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 GABRA5P31644 462 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 EFNB2P52799 333 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 DEFA6Q01524 100 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 ZNF91Q05481 1191 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 PDLIM3Q53GG5 364 aaPredicted RBP13.21□□□□□ -0.29
COL9A3-208ENST00000469802 ZNF626Q68DY1 528 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 LIAT1Q6ZQX7 453 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 UTS2BQ765I0 119 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 Q8IYB0 196 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 DYNAPQ8N1N2 210 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 RNFT2Q96EX2 444 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 MBOAT4Q96T53 435 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 FRRS1LQ9P0K9 344 aa13.21□□□□□ -0.29
COL9A3-208ENST00000469802 PRKDCP78527 4128 aaKnown RBP13.21□□□□□ -0.3
COL9A3-208ENST00000469802 TGP01266 2768 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 TRBV2A0A0J9YWF9 115 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 SLC16A6O15403 523 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 SERPINA3P01011 423 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 KIR2DS4P43632 304 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 RBP2P50120 134 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 ALDH3A2P51648 485 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 CCR9P51686 369 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 OR12D2P58182 307 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 LY6EQ16553 131 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 LDLRAD2Q5SZI1 272 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 TMEM244Q5VVB8 128 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 MEDAGQ5VYS4 303 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 ZFP1Q6P2D0 407 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 GDPD3Q7L5L3 318 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 KCTD20Q7Z5Y7 419 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 LHFPL4Q7Z7J7 247 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 EGFL6Q8IUX8 553 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 OR11H6Q8NGC7 330 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 OR4C13Q8NGP0 309 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 EMG1Q92979 244 aaKnown RBP13.2□□□□□ -0.3
COL9A3-208ENST00000469802 SNX22Q96L94 193 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 RAB18Q9NP72 206 aa13.2□□□□□ -0.3
COL9A3-208ENST00000469802 RBFOX1Q9NWB1 397 aaKnown RBP13.2□□□□□ -0.3
COL9A3-208ENST00000469802 TBL2Q9Y4P3 447 aaKnown RBP13.2□□□□□ -0.3
COL9A3-208ENST00000469802 HAND1O96004 215 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 IGHA1P01876 353 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 IGHV1-8P0DP01 117 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 GABRB1P18505 474 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 ATF1P18846 271 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 AZGP1P25311 298 aaKnown RBP13.19□□□□□ -0.3
COL9A3-208ENST00000469802 NPBWR2P48146 333 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 ATP1B3P54709 279 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 LGALS4P56470 323 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 EDDM3BP56851 147 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 MEF2CQ06413 473 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-208ENST00000469802 KPNB1Q14974 876 aaKnown RBP13.19□□□□□ -0.3
COL9A3-208ENST00000469802 ZNF146Q15072 292 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 C11orf88Q6PI97 169 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 ENTHD1Q8IYW4 607 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 OR52N4Q8NGI2 321 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 OR10AC1Q8NH08 325 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 SPSB1Q96BD6 273 aa13.19□□□□□ -0.3
COL9A3-208ENST00000469802 FOXRED1Q96CU9 486 aaPredicted RBP13.19□□□□□ -0.3
COL9A3-208ENST00000469802 PELI1Q96FA3 418 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms