RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MLNRO43193 412 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 SYNGR1O43759 233 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 HTR3BO95264 441 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 MPIG6BO95866 241 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 PPP3CBP16298 524 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 CEBPDP49716 269 aaPredicted RBP7.85□□□□□ -1.15
USP4-202ENST00000351842 GPR50Q13585 617 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 RIN1Q13671 783 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 KISS1Q15726 138 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 FBXL19-AS1Q494R0 122 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 STEAP3Q658P3 488 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 SAMD12Q8N8I0 201 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 OR4D6Q8NGJ1 314 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 PERPQ96FX8 193 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 CNTD2Q9H8S5 307 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 LIN7BQ9HAP6 207 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 DECR2Q9NUI1 292 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 DNAJB11Q9UBS4 358 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 DOCK11Q5JSL3 2073 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 A0A0U1RQV5 110 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 A6NNC1 897 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 SULT1B1O43704 296 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 CRTAPO75718 401 aaPredicted RBP7.85□□□□□ -1.15
USP4-202ENST00000351842 COX5BP10606 129 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 ATF1P18846 271 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 GABRR1P24046 479 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 BDH1Q02338 343 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 NKAPLQ5M9Q1 402 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 CLVS2Q5SYC1 327 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 PARP16Q8N5Y8 322 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 SETD6Q8TBK2 473 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 HPS1Q92902 700 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 UQCC2Q9BRT2 126 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 TMEM138Q9NPI0 162 aa7.85□□□□□ -1.15
USP4-202ENST00000351842 VSTM5A8MXK1 200 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 F8VVB4 439 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 F8VWA3 439 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 NPBWR2P48146 333 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 SNRPD2P62316 118 aaKnown RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 TNFAIP6P98066 277 aaPredicted RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 SORDQ00796 357 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 COLCA1Q6ZS62 124 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 RHOUQ7L0Q8 258 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 RTN4RL2Q86UN3 420 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 ZNF611Q8N823 705 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 CHST4Q8NCG5 386 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 OR5H6Q8NGV6 325 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 OR51F2Q8NH61 342 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 HPSE2Q8WWQ2 592 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 BARHL1Q9BZE3 327 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 RBFOX1Q9NWB1 397 aaKnown RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 NKIRAS2Q9NYR9 191 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 ZNF581Q9P0T4 197 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 V9GY05 133 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 YLPM1P49750 1951 aaKnown RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 IGKV1-27A0A075B6S5 117 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 MEIS3P1A6NDR6 274 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 CYB5R3P00387 301 aaPredicted RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 RAC2P15153 192 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 PRKACAP17612 351 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 DCTDP32321 178 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 RPS23P62266 143 aaKnown RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 NKX6-1P78426 367 aaPredicted RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 AVPI1Q5T686 147 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 SFXN4Q6P4A7 337 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 GLIPR1L1Q6UWM5 242 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 LGALS14Q8TCE9 139 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 NEK7Q8TDX7 302 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 MRPL24Q96A35 216 aaKnown RBP7.84□□□□□ -1.15
USP4-202ENST00000351842 CEP19Q96LK0 163 aa7.84□□□□□ -1.15
USP4-202ENST00000351842 LOC100289279A0A1B0GTE1 492 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 GATBO75879 557 aaKnown RBP7.84□□□□□ -1.16
USP4-202ENST00000351842 CSTBP04080 98 aaKnown RBP7.84□□□□□ -1.16
USP4-202ENST00000351842 UCHL1P09936 223 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 PRF1P14222 555 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 RBP2P50120 134 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 ACSM1Q08AH1 577 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 ZNF154Q13106 437 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 RSU1Q15404 277 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 SNX29P2Q8IUI4 249 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 CAPSLQ8WWF8 208 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 MARVELD3Q96A59 401 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 HAVCR1Q96D42 359 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 CHST5Q9GZS9 411 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 FGF23Q9GZV9 251 aaPredicted RBP7.84□□□□□ -1.16
USP4-202ENST00000351842 SAP30LQ9HAJ7 183 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 ISYNA1Q9NPH2 558 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 C1orf123Q9NWV4 160 aa7.84□□□□□ -1.16
USP4-202ENST00000351842 TRBV5-5A0A0J9YX44 114 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 FAM221AA4D161 298 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 RGS13O14921 159 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 HPGDSO60760 199 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 HPXP02790 462 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 CFL1P23528 166 aaKnown RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 SOX6P35712 828 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 GABRA2P47869 451 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 MRPL28Q13084 256 aaKnown RBP7.83□□□□□ -1.16
USP4-202ENST00000351842 LAX1Q8IWV1 398 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 TMEM104Q8NE00 496 aa7.83□□□□□ -1.16
USP4-202ENST00000351842 OR8G5Q8NG78 346 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms