RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 TIMD4Q96H15 378 aa12.41□□□□□ -0.42
PNKP-221ENST00000627317 NR1H4Q96RI1 486 aaPredicted RBP12.41□□□□□ -0.42
PNKP-221ENST00000627317 FGF23Q9GZV9 251 aaPredicted RBP12.41□□□□□ -0.42
PNKP-221ENST00000627317 NEK6Q9HC98 313 aa12.41□□□□□ -0.42
PNKP-221ENST00000627317 TMEM106BQ9NUM4 274 aa12.41□□□□□ -0.42
PNKP-221ENST00000627317 SVEP1Q4LDE5 3571 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 TRBV5-5A0A0J9YX44 114 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 FAM230AA0A1W2PPH8 454 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 LRP5LA4QPB2 252 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 CPEP16870 476 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 ATF1P18846 271 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 PCMT1P22061 227 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 GIFP27352 417 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 MAPK3P27361 379 aaPredicted RBP12.4□□□□□ -0.42
PNKP-221ENST00000627317 NR4A2P43354 598 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 GPR6P46095 362 aaPredicted RBP12.4□□□□□ -0.42
PNKP-221ENST00000627317 TMEM33P57088 247 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 UBE2V2Q15819 145 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 NEDD8Q15843 81 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 ARMCX4Q5H9R4 360 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 SERPINA12Q8IW75 414 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 C1orf87Q8N0U7 546 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 PARP16Q8N5Y8 322 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 OR5D14Q8NGL3 314 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 Q8TCH9 128 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 OR14A2Q96R54 314 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 BPESC1Q9GZL8 116 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 ZCCHC4Q9H5U6 513 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 C1orf123Q9NWV4 160 aa12.4□□□□□ -0.42
PNKP-221ENST00000627317 DYSFO75923 2080 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 ZNF879B4DU55 563 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 CYB5R3P00387 301 aaPredicted RBP12.39□□□□□ -0.43
PNKP-221ENST00000627317 PRKACBP22694 351 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 PSMA1P25786 263 aaKnown RBP12.39□□□□□ -0.43
PNKP-221ENST00000627317 FUT6P51993 359 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 RPS11P62280 158 aaKnown RBP eCLIP12.39□□□□□ -0.43
PNKP-221ENST00000627317 PPP3R1P63098 170 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 HNRNPA0Q13151 305 aaKnown RBP12.39□□□□□ -0.43
PNKP-221ENST00000627317 RIN1Q13671 783 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 TRAM1Q15629 374 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 ZNF181Q2M3W8 571 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 ZNF573Q86YE8 665 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 PHC2Q8IXK0 858 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 RPL3LQ92901 407 aaKnown RBP12.39□□□□□ -0.43
PNKP-221ENST00000627317 RAB1CQ92928 201 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 SPSB1Q96BD6 273 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 BORCS8Q96FH0 119 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 TLNRD1Q9H1K6 362 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 DCAF16Q9NXF7 216 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 TAS2R4Q9NYW5 299 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 RNF7Q9UBF6 113 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 CKLFQ9UBR5 152 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 ABCA1O95477 2261 aa12.39□□□□□ -0.43
PNKP-221ENST00000627317 DNHD1Q96M86 4753 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 IGHV4-61A0A0C4DH41 118 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 PQLC2LA1A4F0 135 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 ISPDA4D126 451 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 TMEM178BH3BS89 294 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 SULT1B1O43704 296 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 HCKP08631 526 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 RAB3AP20336 220 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 USF1P22415 310 aaPredicted RBP12.38□□□□□ -0.43
PNKP-221ENST00000627317 AZGP1P25311 298 aaKnown RBP12.38□□□□□ -0.43
PNKP-221ENST00000627317 GABRA5P31644 462 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 PMELP40967 661 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 RBP2P50120 134 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 RPS25P62851 125 aaKnown RBP12.38□□□□□ -0.43
PNKP-221ENST00000627317 ACSM3Q53FZ2 586 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 AVPI1Q5T686 147 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 HAGHLQ6PII5 290 aaPredicted RBP12.38□□□□□ -0.43
PNKP-221ENST00000627317 ZNF826PQ6ZT77 177 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 LHFPL2Q6ZUX7 228 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 BOLLQ8N9W6 283 aaKnown RBP12.38□□□□□ -0.43
PNKP-221ENST00000627317 SCCPDHQ8NBX0 429 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 DNAAF1Q8NEP3 725 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 TMEM203Q969S6 136 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 DERL3Q96Q80 235 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 OR51I2Q9H344 312 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 WIPI2Q9Y4P8 454 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 ATRQ13535 2644 aa12.38□□□□□ -0.43
PNKP-221ENST00000627317 CUBNO60494 3623 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 TRBV5-7A0A0A0MS05 114 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 IGKV1-9A0A0C4DH69 117 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 A0A1W2PPK0 400 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 J3QT63 122 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 CCRL2O00421 344 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 CDIPTO14735 213 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 MAGEB3O15480 346 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 CRLF1O75462 422 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 RGS9O75916 674 aaPredicted RBP12.37□□□□□ -0.43
PNKP-221ENST00000627317 INMTO95050 263 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 IGHV4-31P0DP07 118 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 FSTP19883 344 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 HAAOP46952 286 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 ATP1B3P54709 279 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 MTCP1P56278 107 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 FAM76BQ5HYJ3 339 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 WDR82Q6UXN9 313 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 PRIMA1Q86XR5 153 aa12.37□□□□□ -0.43
PNKP-221ENST00000627317 LRRC29Q8WV35 223 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms