RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ADAT3Q96EY9 351 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 HIST1H2AAQ96QV6 131 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 DHRS9Q9BPW9 319 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SYT3Q9BQG1 590 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SLC30A2Q9BRI3 323 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 SOX7Q9BT81 388 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 OR51B6Q9H340 312 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 MS4A5Q9H3V2 200 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 POFUT1Q9H488 388 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 TCF7L1Q9HCS4 588 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ABCB9Q9NP78 766 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 EXOSC4Q9NPD3 245 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 TMEM138Q9NPI0 162 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 CYSLTR2Q9NS75 346 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 RSL24D1Q9UHA3 163 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 PURGQ9UJV8 347 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 POU2F3Q9UKI9 436 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 NOP16Q9Y3C1 178 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 ATP23Q9Y6H3 246 aa6.31□□□□□ -1.4
CD44-228ENST00000528455 ANKRD17O75179 2603 aaKnown RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 MAP1AP78559 2803 aaPredicted RBP6.31□□□□□ -1.4
CD44-228ENST00000528455 CELSR1Q9NYQ6 3014 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CCDC168Q8NDH2 2452 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 LOC100506127A0A0U1RQW1 187 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CCDC160A6NGH7 325 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ANKRD61A6NGH8 418 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 A6NNC1 897 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 B9A039 149 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 MAGEB3O15480 346 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 SULT1B1O43704 296 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 NOL3O60936 208 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 PLAUP00749 431 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ERCC1P07992 297 aaPredicted RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 ADH4P08319 380 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 OR4A8P0C604 315 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ATF1P18846 271 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 RAB3AP20336 220 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 PRKACBP22694 351 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CALRP27797 417 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 BDKRB2P30411 391 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 RPS19P39019 145 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 MPV17P39210 176 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ERVS71-1P61550 626 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 VBP1P61758 197 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 LSM3P62310 102 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 MZT1Q08AG7 82 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CNN3Q15417 329 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 EFNB3Q15768 340 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 UBE2V2Q15819 145 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ADIPOQQ15848 244 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 MST1LQ2TV78 715 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CEACAM21Q3KPI0 293 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 FAM76BQ5HYJ3 339 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 CEP78Q5JTW2 689 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 SPATA46Q5T0L3 261 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 TEPPQ6URK8 271 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 USP43Q70EL4 1123 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 MOB3CQ70IA8 216 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 TMEM200AQ86VY9 491 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 OR1M1Q8NGA1 313 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 PIGCQ92535 297 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 RPL3LQ92901 407 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 SPSB1Q96BD6 273 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 C12orf43Q96C57 262 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 PIK3IP1Q96FE7 263 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 TRMT61AQ96FX7 289 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 CHST5Q9GZS9 411 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 NAA50Q9GZZ1 169 aaKnown RBP6.3□□□□□ -1.4
CD44-228ENST00000528455 PLEKHA1Q9HB21 404 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ITGB1BP2Q9UKP3 347 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 ZDHHC8Q9ULC8 765 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 SLC7A11Q9UPY5 501 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 RHBDD3Q9Y3P4 386 aa6.3□□□□□ -1.4
CD44-228ENST00000528455 SPG11Q96JI7 2443 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 TRAV8-7A0A075B6U6 113 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 PLSCR5A0PG75 271 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 A6NIN4 97 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ANXA2P2A6NMY6 339 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ZNF850A8MQ14 1090 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 H3BMQ9 156 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 H3BSH0 61 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 TIMM8AO60220 97 aaPredicted RBP6.29□□□□□ -1.4
CD44-228ENST00000528455 LMX1BO60663 402 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 CTAG2O75638 210 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 CDRT1O95170 752 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ACAA1P09110 424 aaPredicted RBP6.29□□□□□ -1.4
CD44-228ENST00000528455 FAHP16930 419 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 PI3P19957 117 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 RAB3BP20337 219 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 CA6P23280 308 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 MYL9P24844 172 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 SDC2P34741 201 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 RBP2P50120 134 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 RORCP51449 518 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 MMP15P51511 669 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 ATP1B3P54709 279 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 NCS1P62166 190 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 PPP3R1P63098 170 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 SPOCK1Q08629 439 aa6.29□□□□□ -1.4
CD44-228ENST00000528455 PRDX4Q13162 271 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms