RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TDRD15B5MCY1 1934 aaKnown RBP12.06□□□□□ -0.48
USP42-206ENST00000479544 ABCA1O95477 2261 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 H0YIG0 161 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 CISD3P0C7P0 127 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 HTR5AP47898 357 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 SNX22Q96L94 193 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 FOXQ1Q9C009 403 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 SLC35B3Q9H1N7 401 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 GCM1Q9NP62 436 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ANKRD10Q9NXR5 420 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 KCNK7Q9Y2U2 307 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 RAB27BO00194 218 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 SLC25A1P53007 311 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 ZNF117Q03924 483 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 EMC4Q5J8M3 183 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 PABPC1L2AQ5JQF8 200 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 EDEM2Q9BV94 578 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 WDR13Q9H1Z4 485 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 LIPGQ9Y5X9 500 aa12.06□□□□□ -0.48
USP42-206ENST00000479544 MSGN1A6NI15 193 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 H7BYZ3 331 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 YKT6O15498 198 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 MYF5P13349 255 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 BMP5P22003 454 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 PEBP1P30086 187 aaKnown RBP12.05□□□□□ -0.48
USP42-206ENST00000479544 VN1R1Q9GZP7 353 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 IGHV3-15A0A0B4J1V0 119 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 TP53I11O14683 189 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 IAPPP10997 89 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 HIST1H1DP16402 221 aaKnown RBP12.05□□□□□ -0.48
USP42-206ENST00000479544 LPAR6P43657 344 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 TMEM41BQ5BJD5 291 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 OR2B11Q5JQS5 317 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 PARM1Q6UWI2 310 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 ARRDC1Q8N5I2 433 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 C15orf54Q8N8G6 183 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 EDAQ92838 391 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 MR1Q95460 341 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 COX14Q96I36 57 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 FAAP24Q9BTP7 215 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 S1PR5Q9H228 398 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 PRDM6Q9NQX0 595 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 TMEM74BQ9NUR3 256 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 OR2J2O76002 312 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 MT-ATP6P00846 226 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 HLA-DOBP13765 273 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 PPICP45877 212 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 HSD17B7P56937 341 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 LTC4SQ16873 150 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 AADACL3Q5VUY0 350 aa12.05□□□□□ -0.48
USP42-206ENST00000479544 MRPL24Q96A35 216 aaKnown RBP12.05□□□□□ -0.48
USP42-206ENST00000479544 MEX3AA1L020 520 aaKnown RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 EFSO43281 561 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 CLDN1O95832 211 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 CELA2BP08218 269 aaPredicted RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 MSX1P28360 303 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 B2MP61769 119 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 SLC35A1P78382 337 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 SSBP1Q04837 148 aaKnown RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 RTL10Q7L3V2 364 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 SHISA5Q8N114 240 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 OR2I1PQ8NGU4 316 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 C8orf44Q96CB5 159 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 RPP25Q9BUL9 199 aaKnown RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 HSF4Q9ULV5 492 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 MGAMO43451 1857 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 WDR81Q562E7 1941 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 ZNF646O15015 1829 aaPredicted RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 FAM221BA6H8Z2 402 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 OR6C6A6NF89 314 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 RPS11P62280 158 aaKnown RBP eCLIP12.04□□□□□ -0.48
USP42-206ENST00000479544 PMP22Q01453 160 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 SPRED2Q7Z698 418 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 CDC20BQ86Y33 519 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 LINC00469Q8N7U9 141 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 NAA11Q9BSU3 229 aaPredicted RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 GSN-AS1Q9NRJ2 163 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 NECAP2Q9NVZ3 263 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 SLC17A4Q9Y2C5 497 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 MYO16Q9Y6X6 1858 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 PRAMEF26H0Y7S4 382 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 VSIG8P0DPA2 414 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 RPL29P47914 159 aaKnown RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 DHRS11Q6UWP2 260 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 MRGPREQ86SM8 312 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 FAM185AQ8N0U4 392 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 APCDD1LQ8NCL9 501 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 NINJ1Q92982 152 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 TCTN2Q96GX1 697 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 PLEKHA2Q9HB19 425 aa12.04□□□□□ -0.48
USP42-206ENST00000479544 RIF1Q5UIP0 2472 aaKnown RBP12.04□□□□□ -0.48
USP42-206ENST00000479544 UPK3AO75631 287 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 SPANXN5Q5MJ07 72 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 ZSCAN4Q8NAM6 433 aaPredicted RBP12.03□□□□□ -0.48
USP42-206ENST00000479544 DTWD2Q8NBA8 298 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 RSPO3Q9BXY4 272 aaPredicted RBP12.03□□□□□ -0.48
USP42-206ENST00000479544 OPA3Q9H6K4 179 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 RAB18Q9NP72 206 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 RLFQ13129 1914 aa12.03□□□□□ -0.48
USP42-206ENST00000479544 ATRXP46100 2492 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms