RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C ESL2P36168 1195 aa6.52□□□□□ -1.37
DEF1YKL054C BNA2P47125 453 aa6.52□□□□□ -1.37
DEF1YKL054C CCM1P48237 864 aaPredicted RBP6.52□□□□□ -1.37
DEF1YKL054C CTF18P49956 741 aa6.52□□□□□ -1.37
DEF1YKL054C YKE2P52553 114 aa6.52□□□□□ -1.37
DEF1YKL054C CBK1P53894 756 aa6.52□□□□□ -1.37
DEF1YKL054C ZDS2P54786 942 aa6.52□□□□□ -1.37
DEF1YKL054C YDR514CQ04408 483 aa6.52□□□□□ -1.37
DEF1YKL054C ESC8Q08119 714 aa6.52□□□□□ -1.37
DEF1YKL054C CUE5Q08412 411 aaKnown RBP6.52□□□□□ -1.37
DEF1YKL054C YIG1Q08956 461 aa6.52□□□□□ -1.37
DEF1YKL054C RRP36Q12481 300 aaPredicted RBP6.52□□□□□ -1.37
DEF1YKL054C SEC27P41811 889 aaKnown RBP6.51□□□□□ -1.37
DEF1YKL054C IRC5P43610 853 aa6.51□□□□□ -1.37
DEF1YKL054C CWC2Q12046 339 aaPredicted RBP6.51□□□□□ -1.37
DEF1YKL054C CPA2P03965 1118 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C FUM1P08417 488 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C SWI6P09959 803 aa6.5□□□□□ -1.37
DEF1YKL054C SEC65P29478 273 aa6.5□□□□□ -1.37
DEF1YKL054C LSB6P42951 607 aa6.5□□□□□ -1.37
DEF1YKL054C MDE1P47095 244 aa6.5□□□□□ -1.37
DEF1YKL054C GUP1P53154 560 aa6.5□□□□□ -1.37
DEF1YKL054C HEL2Q05580 639 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C HAL9Q12180 1030 aa6.5□□□□□ -1.37
DEF1YKL054C PTC5Q12511 572 aa6.5□□□□□ -1.37
DEF1YKL054C CYS3P31373 394 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C MSC7P38694 644 aa6.5□□□□□ -1.37
DEF1YKL054C TIM50Q02776 476 aa6.5□□□□□ -1.37
DEF1YKL054C HOS3Q02959 697 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C EAR1Q03212 550 aa6.5□□□□□ -1.37
DEF1YKL054C PRP42Q03776 544 aaKnown RBP6.5□□□□□ -1.37
DEF1YKL054C MET17P06106 444 aa6.49□□□□□ -1.37
DEF1YKL054C ROX1P25042 368 aa6.49□□□□□ -1.37
DEF1YKL054C SGF29P25554 259 aa6.49□□□□□ -1.37
DEF1YKL054C SWD1P39706 426 aa6.49□□□□□ -1.37
DEF1YKL054C NPP2P39997 493 aa6.49□□□□□ -1.37
DEF1YKL054C YBR182C-AQ8TGU6 64 aa6.49□□□□□ -1.37
DEF1YKL054C PMS1P14242 873 aa6.49□□□□□ -1.37
DEF1YKL054C VMA2P16140 517 aaKnown RBP6.49□□□□□ -1.37
DEF1YKL054C REC107P21651 314 aa6.49□□□□□ -1.37
DEF1YKL054C MCM3P24279 971 aaKnown RBP6.49□□□□□ -1.37
DEF1YKL054C SLA2P33338 968 aa6.49□□□□□ -1.37
DEF1YKL054C ARL1P38116 183 aaKnown RBP6.49□□□□□ -1.37
DEF1YKL054C YLF2P38746 405 aa6.49□□□□□ -1.37
DEF1YKL054C REX3Q12090 404 aa6.49□□□□□ -1.37
DEF1YKL054C NUC1P08466 329 aa6.48□□□□□ -1.37
DEF1YKL054C YKR051WP36142 418 aa6.48□□□□□ -1.37
DEF1YKL054C STT3P39007 718 aaKnown RBP6.48□□□□□ -1.37
DEF1YKL054C SCS2P40075 244 aaKnown RBP6.48□□□□□ -1.37
DEF1YKL054C YMR265CQ03508 461 aaKnown RBP6.48□□□□□ -1.37
DEF1YKL054C SYT1Q06836 1226 aa6.48□□□□□ -1.37
DEF1YKL054C SOG2Q08817 791 aa6.48□□□□□ -1.37
DEF1YKL054C SET3P36124 751 aa6.48□□□□□ -1.37
DEF1YKL054C YBR138CP38277 524 aa6.48□□□□□ -1.37
DEF1YKL054C RPN10P38886 268 aaKnown RBP6.48□□□□□ -1.37
DEF1YKL054C SAW1P39735 261 aa6.48□□□□□ -1.37
DEF1YKL054C YJL068CP40363 299 aa6.48□□□□□ -1.37
DEF1YKL054C DJP1P40564 432 aa6.48□□□□□ -1.37
DEF1YKL054C PIL1P53252 339 aaKnown RBP6.48□□□□□ -1.37
DEF1YKL054C YDR461C-AQ2V2P7 80 aa6.48□□□□□ -1.37
DEF1YKL054C YCL002CP25565 263 aa6.47□□□□□ -1.37
DEF1YKL054C DBF4P32325 704 aa6.47□□□□□ -1.37
DEF1YKL054C KNS1P32350 737 aaPredicted RBP6.47□□□□□ -1.37
DEF1YKL054C STL1P39932 569 aa6.47□□□□□ -1.37
DEF1YKL054C CIT3P43635 486 aa6.47□□□□□ -1.37
DEF1YKL054C SPO74P45819 413 aa6.47□□□□□ -1.37
DEF1YKL054C MTD1Q02046 320 aaKnown RBP6.47□□□□□ -1.37
DEF1YKL054C SNO4Q04902 237 aa6.47□□□□□ -1.37
DEF1YKL054C YCG1Q06680 1035 aa6.47□□□□□ -1.37
DEF1YKL054C HSP33Q08914 237 aaKnown RBP6.47□□□□□ -1.37
DEF1YKL054C HSP32Q08992 237 aa6.47□□□□□ -1.37
DEF1YKL054C SEC21P32074 935 aaKnown RBP6.46□□□□□ -1.37
DEF1YKL054C HXT4P32467 576 aa6.46□□□□□ -1.37
DEF1YKL054C TGL1P34163 548 aa6.46□□□□□ -1.37
DEF1YKL054C VPS41P38959 992 aa6.46□□□□□ -1.37
DEF1YKL054C LYS14P40971 790 aa6.46□□□□□ -1.37
DEF1YKL054C SIP4P46954 829 aa6.46□□□□□ -1.37
DEF1YKL054C NCS2P53923 493 aaPredicted RBP6.46□□□□□ -1.37
DEF1YKL054C ADE12P80210 433 aaKnown RBP6.46□□□□□ -1.37
DEF1YKL054C LRS4Q04087 347 aaKnown RBP6.46□□□□□ -1.37
DEF1YKL054C NGL1Q08213 363 aaKnown RBP6.46□□□□□ -1.37
DEF1YKL054C RPL19AP0CX82 189 aaKnown RBP6.46□□□□□ -1.38
DEF1YKL054C RPL19BP0CX83 189 aaPredicted RBP6.46□□□□□ -1.38
DEF1YKL054C GLN4P13188 809 aaKnown RBP6.46□□□□□ -1.38
DEF1YKL054C SRP68P38687 599 aaKnown RBP6.46□□□□□ -1.38
DEF1YKL054C MAD2P40958 196 aa6.46□□□□□ -1.38
DEF1YKL054C FET4P40988 552 aa6.46□□□□□ -1.38
DEF1YKL054C VPS9P54787 451 aa6.46□□□□□ -1.38
DEF1YKL054C HAS1Q03532 505 aaKnown RBP6.46□□□□□ -1.38
DEF1YKL054C HPF1Q05164 967 aa6.46□□□□□ -1.38
DEF1YKL054C RTK1Q12100 620 aaPredicted RBP6.46□□□□□ -1.38
DEF1YKL054C MRP10O75012 95 aa6.45□□□□□ -1.38
DEF1YKL054C ARG3P05150 338 aa6.45□□□□□ -1.38
DEF1YKL054C SES1P07284 462 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C YKR078WP36158 585 aaKnown RBP6.45□□□□□ -1.38
DEF1YKL054C PPE1P38796 400 aa6.45□□□□□ -1.38
DEF1YKL054C CIR1P42940 261 aa6.45□□□□□ -1.38
DEF1YKL054C POL31P46957 487 aa6.45□□□□□ -1.38
DEF1YKL054C ALY2P47029 1046 aa6.45□□□□□ -1.38
DEF1YKL054C GYP7P48365 746 aa6.45□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms