RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	YFL052W	P43551	465 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	PMT3	P47190	753 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	PSR1	Q07800	427 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	THI73	Q07904	523 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	GUP2	Q08929	609 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	UPC2	Q12151	913 aa		5.2	□□□□□ -1.58
KIN28	YDL108W	FBP1	P09201	348 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	PGI1	P12709	554 aa	Known RBP	5.19	□□□□□ -1.58
KIN28	YDL108W	PRP6	P19735	899 aa	Predicted RBP	5.19	□□□□□ -1.58
KIN28	YDL108W	TOD6	P34219	525 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	HSL7	P38274	827 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	CTF8	P38877	133 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	RRP8	P38961	392 aa	Known RBP	5.19	□□□□□ -1.58
KIN28	YDL108W	POP2	P39008	433 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	SEC9	P40357	651 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	NPY1	P53164	384 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	HOL1	P53389	586 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	YDR338C	Q05497	695 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	YLR224W	Q05947	369 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	RRP9	Q06506	573 aa	Known RBP	5.19	□□□□□ -1.58
KIN28	YDL108W	GUD1	Q07729	489 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	THI21	Q08975	551 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	YRM1	Q12340	786 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	NPC2	Q12408	173 aa		5.19	□□□□□ -1.58
KIN28	YDL108W	CDC31	P06704	161 aa	Known RBP	5.18	□□□□□ -1.58
KIN28	YDL108W	SUI2	P20459	304 aa	Known RBP	5.18	□□□□□ -1.58
KIN28	YDL108W	YKL050C	P35736	922 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	MGS1	P40151	587 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	CHA4	P43634	648 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	YJR120W	P47157	116 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	YGR237C	P50089	785 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	AIM14	P53109	570 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	MET13	P53128	600 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	YMR111C	Q04461	462 aa	Predicted RBP	5.18	□□□□□ -1.58
KIN28	YDL108W	CDC45	Q08032	650 aa		5.18	□□□□□ -1.58
KIN28	YDL108W	PIF1	P07271	859 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	HMG1	P12683	1054 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	PTH2	P34222	208 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	YKL100C	P34248	587 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	PCM1	P38628	557 aa	Known RBP	5.17	□□□□□ -1.58
KIN28	YDL108W	CCT3	P39077	534 aa	Known RBP	5.17	□□□□□ -1.58
KIN28	YDL108W	PLB1	P39105	664 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	SSY5	P47002	699 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	UBA2	P52488	636 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	ZIP2	P53061	704 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	NCS6	P53088	359 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	UBX4	P54730	416 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	TIM11	P81449	96 aa	Predicted RBP	5.17	□□□□□ -1.58
KIN28	YDL108W	UME1	Q03010	460 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	ATG33	Q06485	197 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	PCL8	Q08966	492 aa		5.17	□□□□□ -1.58
KIN28	YDL108W	STE14	P32584	239 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	ECM32	P32644	1121 aa	Known RBP	5.16	□□□□□ -1.58
KIN28	YDL108W	PZF1	P39933	429 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	MAM1	P40065	302 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	UBC9	P50623	157 aa	Predicted RBP	5.16	□□□□□ -1.58
KIN28	YDL108W	SPC105	P53148	917 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	RPN7	Q06103	429 aa	Known RBP	5.16	□□□□□ -1.58
KIN28	YDL108W	TMA10	Q06177	86 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	SWM1	Q12379	170 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	KCS1	Q12494	1050 aa		5.16	□□□□□ -1.58
KIN28	YDL108W	STF1	P01098	86 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	YCR015C	P25616	317 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	VMA8	P32610	256 aa	Known RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	TYS1	P36421	394 aa	Known RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	SAK1	P38990	1142 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	MNT3	P40549	630 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	GPP1	P41277	250 aa	Known RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	MTR3	P48240	250 aa	Predicted RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	FAP7	Q12055	197 aa	Predicted RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	DBP10	Q12389	995 aa	Known RBP	5.15	□□□□□ -1.59
KIN28	YDL108W	YOL087C	Q99247	1116 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	MPD2	Q99316	277 aa		5.15	□□□□□ -1.59
KIN28	YDL108W	YLR358C	O13565	187 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
KIN28	YDL108W	CAD1	P24813	409 aa	Known RBP	5.14	□□□□□ -1.59
KIN28	YDL108W	SEC21	P32074	935 aa	Known RBP	5.14	□□□□□ -1.59
KIN28	YDL108W	PRP19	P32523	503 aa	Known RBP	5.14	□□□□□ -1.59
KIN28	YDL108W	YKR051W	P36142	418 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	PIM1	P36775	1133 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	FLR1	P38124	548 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	EXO84	P38261	753 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	TIF5	P38431	405 aa	Known RBP	5.14	□□□□□ -1.59
KIN28	YDL108W	TMA108	P40462	946 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	BNA2	P47125	453 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	YDR286C	Q05530	114 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	CLP1	Q08685	445 aa	Predicted RBP	5.14	□□□□□ -1.59
KIN28	YDL108W	YLR149C	Q99296	730 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	Q0142	Q9ZZW4	58 aa		5.14	□□□□□ -1.59
KIN28	YDL108W	SST2	P11972	698 aa	Known RBP	5.13	□□□□□ -1.59
KIN28	YDL108W	MIH1	P23748	554 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	PGS1	P25578	521 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	RPL5	P26321	297 aa	Known RBP	5.13	□□□□□ -1.59
KIN28	YDL108W	NGG1	P32494	702 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	IME2	P32581	645 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	LST4	P34239	828 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	NUP120	P35729	1037 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	ESL2	P36168	1195 aa		5.13	□□□□□ -1.59
KIN28	YDL108W	TIF4631	P39935	952 aa	Known RBP	5.13	□□□□□ -1.59
KIN28	YDL108W	VHR1	P40522	640 aa		5.13	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms