RNA–Protein interactions for RNA: ENST00000566082.1

USB1-212, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2

Gene USB1, Length 3,888 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-212ENST00000566082 TLR7Q9NYK1 1049 aaKnown RBP12.12□□□□□ -0.47
USB1-212ENST00000566082 TXLNAP40222 546 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 MYL5Q02045 173 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 KIAA1328Q86T90 577 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 MRFAP1L1Q96HT8 127 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 NUP88Q99567 741 aaPredicted RBP12.11□□□□□ -0.47
USB1-212ENST00000566082 KCNF1Q9H3M0 494 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 EFCAB6Q5THR3 1501 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 KIF6Q6ZMV9 814 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 WASF1Q92558 559 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 ELP1O95163 1332 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 TNNI3KQ59H18 835 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 TMEM67Q5HYA8 995 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 PLCD3Q8N3E9 789 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 AKAP2Q9Y2D5 859 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 FPGT-TNNI3KV9GXZ4 949 aa12.11□□□□□ -0.47
USB1-212ENST00000566082 ZNF202O95125 648 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 CAPN2P17655 700 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 AFMP43652 599 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 TTC14Q96N46 770 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 DDX21Q9NR30 783 aaKnown RBP eCLIP12.1□□□□□ -0.47
USB1-212ENST00000566082 EIF5P55010 431 aaKnown RBP12.1□□□□□ -0.47
USB1-212ENST00000566082 STX17P56962 302 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 SSRP1Q08945 709 aaKnown RBP12.1□□□□□ -0.47
USB1-212ENST00000566082 ZNF589Q86UQ0 364 aaPredicted RBP12.1□□□□□ -0.47
USB1-212ENST00000566082 GOLGA1Q92805 767 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.1□□□□□ -0.47
USB1-212ENST00000566082 QRICH2Q9H0J4 1663 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 MINDY4BA8MYZ0 360 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 BAG1Q99933 345 aaPredicted RBP12.1□□□□□ -0.47
USB1-212ENST00000566082 LLPHQ9BRT6 129 aaKnown RBP12.1□□□□□ -0.47
USB1-212ENST00000566082 VPS18Q9P253 973 aa12.1□□□□□ -0.47
USB1-212ENST00000566082 ATP10DQ9P241 1426 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 TULP4Q9NRJ4 1543 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 RHOXF2BP0C7M4 288 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 NAA16Q6N069 864 aaPredicted RBP12.09□□□□□ -0.47
USB1-212ENST00000566082 KRBA2Q6ZNG9 492 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 NFATC2IPQ8NCF5 419 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 CCDC148Q8NFR7 591 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 RHOXF2Q9BQY4 288 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 TUBB4AP04350 444 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 NECTIN1Q15223 517 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 ZNF710Q8N1W2 664 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 DEF6Q9H4E7 631 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 CEP131Q9UPN4 1083 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 CPSF1Q10570 1443 aaKnown RBP12.09□□□□□ -0.47
USB1-212ENST00000566082 RNF17Q9BXT8 1623 aaKnown RBP12.09□□□□□ -0.47
USB1-212ENST00000566082 ZBTB43O43298 467 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 ZSCAN20P17040 1043 aaPredicted RBP12.09□□□□□ -0.47
USB1-212ENST00000566082 IFIT5Q13325 482 aaKnown RBP12.09□□□□□ -0.47
USB1-212ENST00000566082 PTPN21Q16825 1174 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 CCDC144BQ3MJ40 725 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 CCDC181Q5TID7 509 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 ATL3Q6DD88 541 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 KIAA1468Q9P260 1216 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 IMPACTQ9P2X3 320 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 RSPH14Q9UHP6 348 aa12.09□□□□□ -0.47
USB1-212ENST00000566082 ARHGEF10O15013 1369 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 RNMTO43148 476 aaKnown RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 SNRPA1P09661 255 aaKnown RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 CCDC175P0C221 793 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 PPP2R3AQ06190 1150 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 SPECC1Q5M775 1068 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 ANO1Q5XXA6 986 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 CWC25Q9NXE8 425 aaPredicted RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 CDK12Q9NYV4 1490 aaPredicted RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 RPAP1Q9BWH6 1393 aaPredicted RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 PRR36Q9H6K5 1346 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 PATL2C9JE40 543 aaKnown RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 N4BP3O15049 544 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 TAF5LO75529 589 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 SCRN1Q12765 414 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 NBPF6Q5VWK0 638 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 FBXO38Q6PIJ6 1188 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 NEK11Q8NG66 645 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 SMARCC1Q92922 1105 aaPredicted RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 NBPF4Q96M43 638 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 CENPHQ9H3R5 247 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 BABAM1Q9NWV8 329 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 ABCF2Q9UG63 623 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 GLI2P10070 1586 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 METP08581 1390 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 PROSER3Q2NL68 480 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 BRAPQ7Z569 592 aa12.08□□□□□ -0.48
USB1-212ENST00000566082 PROSER2Q86WR7 435 aaPredicted RBP12.08□□□□□ -0.48
USB1-212ENST00000566082 RNF113AO15541 343 aaKnown RBP12.07□□□□□ -0.48
USB1-212ENST00000566082 HOXB7P09629 217 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 ETF1P62495 437 aaKnown RBP12.07□□□□□ -0.48
USB1-212ENST00000566082 TOM1L2Q6ZVM7 507 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 LRP2BPQ9P2M1 347 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 PCDHA7Q9UN72 937 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 ATP7BP35670 1465 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 CEP152O94986 1710 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 TNRQ92752 1358 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 PLEKHG3A1L390 1219 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 ATF3P18847 181 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 NDUFA8P51970 172 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 STIM1Q13586 685 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 DPCR1Q3MIW9 517 aa12.07□□□□□ -0.48
USB1-212ENST00000566082 ZNF569Q5MCW4 686 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms