RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 CPNE3O75131 537 aaKnown RBP6.18□□□□□ -1.42
VRK1-202ENST00000553683 CDC27P30260 824 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 CEP135Q66GS9 1140 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 IGF2-ASQ6U949 168 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 ZSCAN29Q8IWY8 852 aaPredicted RBP6.18□□□□□ -1.42
VRK1-202ENST00000553683 IL22RA1Q8N6P7 574 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 BHLHE41Q9C0J9 482 aaPredicted RBP6.18□□□□□ -1.42
VRK1-202ENST00000553683 KANSL3Q9P2N6 904 aa6.18□□□□□ -1.42
VRK1-202ENST00000553683 FOXD3Q9UJU5 478 aaPredicted RBP6.18□□□□□ -1.42
VRK1-202ENST00000553683 PDE2AO00408 941 aaPredicted RBP6.17□□□□□ -1.42
VRK1-202ENST00000553683 MSTNO14793 375 aa6.17□□□□□ -1.42
VRK1-202ENST00000553683 ITGB2P05107 769 aa6.17□□□□□ -1.42
VRK1-202ENST00000553683 ATP11AP98196 1134 aa6.17□□□□□ -1.42
VRK1-202ENST00000553683 GDF6Q6KF10 455 aaPredicted RBP6.17□□□□□ -1.42
VRK1-202ENST00000553683 CD163Q86VB7 1156 aa6.17□□□□□ -1.42
VRK1-202ENST00000553683 POP1Q99575 1024 aaKnown RBP6.17□□□□□ -1.42
VRK1-202ENST00000553683 TRIM33Q9UPN9 1127 aa6.17□□□□□ -1.42
VRK1-202ENST00000553683 C1QTNF9BB2RNN3 333 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 DLL1O00548 723 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 GPR182O15218 404 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 KIAA0319Q5VV43 1072 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 FAM117BQ6P1L5 589 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 TMC7Q7Z402 723 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 KLHL23Q8NBE8 558 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 TMC1Q8TDI8 760 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 NXPE3Q969Y0 559 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 ASB16Q96NS5 453 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 OSMRQ99650 979 aa6.16□□□□□ -1.42
VRK1-202ENST00000553683 TREHO43280 583 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 DEAF1O75398 565 aaPredicted RBP6.15□□□□□ -1.42
VRK1-202ENST00000553683 CABP4P57796 275 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 ADGRE1Q14246 886 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 DSC3Q14574 896 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 SETDB1Q15047 1291 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 PEAR1Q5VY43 1037 aaPredicted RBP6.15□□□□□ -1.42
VRK1-202ENST00000553683 SND1Q7KZF4 910 aaKnown RBP eCLIP6.15□□□□□ -1.42
VRK1-202ENST00000553683 TMEM130Q8N3G9 435 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 BSNDQ8WZ55 320 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 CSRNP1Q96S65 589 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 SPOCK3Q9BQ16 436 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 ZKSCAN3Q9BRR0 538 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 OSGEPQ9NPF4 335 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 SOX13Q9UN79 622 aa6.15□□□□□ -1.42
VRK1-202ENST00000553683 H3BRJ5 948 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 EIF1AYO14602 144 aaKnown RBP6.14□□□□□ -1.43
VRK1-202ENST00000553683 PROCP04070 461 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 SELPP16109 830 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 MAPK1P28482 360 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 CHRNA4P43681 627 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 PIP4K2BP78356 416 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 COL19A1Q14993 1142 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 GPAT2Q6NUI2 795 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 NIF3L1Q9GZT8 377 aa6.14□□□□□ -1.43
VRK1-202ENST00000553683 SOX17Q9H6I2 414 aaPredicted RBP6.14□□□□□ -1.43
VRK1-202ENST00000553683 FAM229AH3BQW9 127 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 GATA4P43694 442 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 PLCB3Q01970 1234 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 PTPN12Q05209 780 aaKnown RBP6.13□□□□□ -1.43
VRK1-202ENST00000553683 GRIK4Q16099 956 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 CCNJLQ8IV13 435 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 FBF1Q8TES7 1133 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 MRPL18Q9H0U6 180 aaKnown RBP6.13□□□□□ -1.43
VRK1-202ENST00000553683 ZFYVE1Q9HBF4 777 aa6.13□□□□□ -1.43
VRK1-202ENST00000553683 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.13□□□□□ -1.43
VRK1-202ENST00000553683 A0A1W2PP55 124 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 TM4SF5O14894 197 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 FSCN2O14926 492 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 FGD1P98174 961 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 ORC1Q13415 861 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 MBTPS1Q14703 1052 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 PRPF40BQ6NWY9 871 aaKnown RBP6.12□□□□□ -1.43
VRK1-202ENST00000553683 AEBP1Q8IUX7 1158 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 CCDC74AQ96AQ1 378 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 LACRTQ9GZZ8 138 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 SEC31BQ9NQW1 1179 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 TRAK1Q9UPV9 953 aa6.12□□□□□ -1.43
VRK1-202ENST00000553683 EPHA1P21709 976 aa6.11□□□□□ -1.43
VRK1-202ENST00000553683 ARL4DP49703 201 aa6.11□□□□□ -1.43
VRK1-202ENST00000553683 FMR1Q06787 632 aaKnown RBP eCLIP6.11□□□□□ -1.43
VRK1-202ENST00000553683 ENOX2Q16206 610 aaKnown RBP6.11□□□□□ -1.43
VRK1-202ENST00000553683 TXNRD3Q86VQ6 643 aa6.11□□□□□ -1.43
VRK1-202ENST00000553683 TCF12Q99081 682 aa6.11□□□□□ -1.43
VRK1-202ENST00000553683 LINC01387J3KSC0 135 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 GIPC1O14908 333 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 ACPPP15309 386 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 ERCC3P19447 782 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 ITPKAP23677 461 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 CD68P34810 354 aaPredicted RBP6.1□□□□□ -1.43
VRK1-202ENST00000553683 SUZ12Q15022 739 aaKnown RBP6.1□□□□□ -1.43
VRK1-202ENST00000553683 RPS26P11Q5JNZ5 115 aaPredicted RBP6.1□□□□□ -1.43
VRK1-202ENST00000553683 ADAMTSL4Q6UY14 1074 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 VN1R5Q7Z5H4 357 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 LIN7BQ9HAP6 207 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 SH2B1Q9NRF2 756 aaPredicted RBP6.1□□□□□ -1.43
VRK1-202ENST00000553683 PPP4R2Q9NY27 417 aa6.1□□□□□ -1.43
VRK1-202ENST00000553683 A0A096LPE4 126 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 A0A1W2PPZ6 126 aa6.09□□□□□ -1.43
VRK1-202ENST00000553683 POLR3DP05423 398 aaPredicted RBP6.09□□□□□ -1.43
VRK1-202ENST00000553683 XRCC5P13010 732 aaKnown RBP6.09□□□□□ -1.43
VRK1-202ENST00000553683 C19orf57Q0VDD7 668 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms