RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 AEBP2Q6ZN18 517 aaPredicted RBP19.11■□□□□ 0.65
VRK1-202ENST00000553683 CHIC1Q5VXU3 224 aa18.71■□□□□ 0.59
VRK1-202ENST00000553683 PHF23Q9BUL5 403 aaPredicted RBP16.37■□□□□ 0.21
VRK1-202ENST00000553683 SENP3Q9H4L4 574 aaPredicted RBP16.35■□□□□ 0.21
VRK1-202ENST00000553683 PLPPR3Q6T4P5 718 aa15.2■□□□□ 0.02
VRK1-202ENST00000553683 FOXD1Q16676 465 aa15.09■□□□□ 0.01
VRK1-202ENST00000553683 PPP6R1Q9UPN7 881 aa14.43□□□□□ -0.1
VRK1-202ENST00000553683 ADRA2BP18089 450 aa14.4□□□□□ -0.1
VRK1-202ENST00000553683 PIAS4Q8N2W9 510 aaPredicted RBP14.21□□□□□ -0.13
VRK1-202ENST00000553683 MSH5O43196 834 aa14.05□□□□□ -0.16
VRK1-202ENST00000553683 SCAF1Q9H7N4 1312 aaKnown RBP13.36□□□□□ -0.27
VRK1-202ENST00000553683 PPP4R3CPQ6ZMV5 832 aa13.33□□□□□ -0.28
VRK1-202ENST00000553683 MAPK8IP2Q13387 824 aaPredicted RBP13.06□□□□□ -0.32
VRK1-202ENST00000553683 NCBP3Q53F19 620 aaKnown RBP13.05□□□□□ -0.32
VRK1-202ENST00000553683 CNKSR2Q8WXI2 1034 aa13.02□□□□□ -0.33
VRK1-202ENST00000553683 DMRT2Q9Y5R5 561 aa13.02□□□□□ -0.33
VRK1-202ENST00000553683 KCNA4P22459 653 aa12.9□□□□□ -0.34
VRK1-202ENST00000553683 RNF216Q9NWF9 866 aaPredicted RBP12.8□□□□□ -0.36
VRK1-202ENST00000553683 POTEDQ86YR6 584 aa12.78□□□□□ -0.36
VRK1-202ENST00000553683 NPM3O75607 178 aaKnown RBP12.76□□□□□ -0.37
VRK1-202ENST00000553683 HOXD11P31277 338 aaPredicted RBP12.76□□□□□ -0.37
VRK1-202ENST00000553683 DNAJC5BQ9UF47 199 aa12.62□□□□□ -0.39
VRK1-202ENST00000553683 DCAF8L1A6NGE4 600 aa12.32□□□□□ -0.44
VRK1-202ENST00000553683 SLC4A1APQ9BWU0 796 aaKnown RBP12.31□□□□□ -0.44
VRK1-202ENST00000553683 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.08□□□□□ -0.48
VRK1-202ENST00000553683 SLC4A2P04920 1241 aa12.05□□□□□ -0.48
VRK1-202ENST00000553683 RNF39Q9H2S5 420 aa11.99□□□□□ -0.49
VRK1-202ENST00000553683 FOXD4L1Q9NU39 408 aa11.97□□□□□ -0.49
VRK1-202ENST00000553683 C1QBPQ07021 282 aaKnown RBP11.9□□□□□ -0.5
VRK1-202ENST00000553683 U3KPZ7 1027 aaPredicted RBP11.87□□□□□ -0.51
VRK1-202ENST00000553683 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.85□□□□□ -0.51
VRK1-202ENST00000553683 MYCNP04198 464 aaPredicted RBP11.85□□□□□ -0.51
VRK1-202ENST00000553683 HNRNPUL2Q1KMD3 747 aaKnown RBP11.85□□□□□ -0.51
VRK1-202ENST00000553683 ZBTB22O15209 634 aa11.84□□□□□ -0.51
VRK1-202ENST00000553683 EHMT2Q96KQ7 1210 aa11.78□□□□□ -0.52
VRK1-202ENST00000553683 SAMD1Q6SPF0 538 aaPredicted RBP11.77□□□□□ -0.53
VRK1-202ENST00000553683 CSRNP3Q8WYN3 585 aa11.77□□□□□ -0.53
VRK1-202ENST00000553683 APLP2Q06481 763 aa11.76□□□□□ -0.53
VRK1-202ENST00000553683 CACNB1Q02641 598 aaPredicted RBP11.66□□□□□ -0.54
VRK1-202ENST00000553683 ATXN8OSP0DMR3 200 aa11.65□□□□□ -0.54
VRK1-202ENST00000553683 ZNF219Q9P2Y4 722 aaPredicted RBP11.53□□□□□ -0.56
VRK1-202ENST00000553683 SPINK5Q9NQ38 1064 aaPredicted RBP11.51□□□□□ -0.57
VRK1-202ENST00000553683 CAPN15O75808 1086 aa11.49□□□□□ -0.57
VRK1-202ENST00000553683 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
VRK1-202ENST00000553683 ATF5Q9Y2D1 282 aaPredicted RBP11.4□□□□□ -0.58
VRK1-202ENST00000553683 DSG3P32926 999 aa11.36□□□□□ -0.59
VRK1-202ENST00000553683 POLA2Q14181 598 aa11.25□□□□□ -0.61
VRK1-202ENST00000553683 ABCB7O75027 752 aa11.2□□□□□ -0.62
VRK1-202ENST00000553683 ZBTB12Q9Y330 459 aaPredicted RBP11.2□□□□□ -0.62
VRK1-202ENST00000553683 FBLN2P98095 1184 aa11.05□□□□□ -0.64
VRK1-202ENST00000553683 MKRN4PQ13434 485 aaPredicted RBP10.95□□□□□ -0.66
VRK1-202ENST00000553683 RBM42Q9BTD8 480 aaKnown RBP10.92□□□□□ -0.66
VRK1-202ENST00000553683 SPDYE2BA6NHP3 402 aa10.85□□□□□ -0.67
VRK1-202ENST00000553683 SPDYE6P0CI01 402 aa10.85□□□□□ -0.67
VRK1-202ENST00000553683 SPDYE2Q495Y8 402 aa10.85□□□□□ -0.67
VRK1-202ENST00000553683 OSCARQ8IYS5 282 aa10.83□□□□□ -0.68
VRK1-202ENST00000553683 AKT1S1Q96B36 256 aa10.75□□□□□ -0.69
VRK1-202ENST00000553683 SSUH2Q9Y2M2 353 aa10.74□□□□□ -0.69
VRK1-202ENST00000553683 ZNF692Q9BU19 519 aaPredicted RBP10.73□□□□□ -0.69
VRK1-202ENST00000553683 SPDYE4A6NLX3 237 aa10.71□□□□□ -0.69
VRK1-202ENST00000553683 FKBP8Q14318 412 aa10.62□□□□□ -0.71
VRK1-202ENST00000553683 PROM2Q8N271 834 aa10.61□□□□□ -0.71
VRK1-202ENST00000553683 REM2Q8IYK8 340 aaPredicted RBP10.58□□□□□ -0.72
VRK1-202ENST00000553683 PABPN1Q86U42 306 aaKnown RBP eCLIP10.56□□□□□ -0.72
VRK1-202ENST00000553683 SPDYE1Q8NFV5 336 aaPredicted RBP10.52□□□□□ -0.73
VRK1-202ENST00000553683 STAG3Q9UJ98 1225 aa10.5□□□□□ -0.73
VRK1-202ENST00000553683 PITPNM1O00562 1244 aa10.43□□□□□ -0.74
VRK1-202ENST00000553683 CHRDL2Q6WN34 429 aa10.4□□□□□ -0.74
VRK1-202ENST00000553683 FBXO3Q9UK99 471 aa10.4□□□□□ -0.74
VRK1-202ENST00000553683 CLEC11AQ9Y240 323 aa10.37□□□□□ -0.75
VRK1-202ENST00000553683 PRR29P0C7W0 189 aa10.33□□□□□ -0.76
VRK1-202ENST00000553683 FXR2P51116 673 aaKnown RBP eCLIP10.31□□□□□ -0.76
VRK1-202ENST00000553683 PIP4P2Q8N4L2 257 aa10.23□□□□□ -0.77
VRK1-202ENST00000553683 PLEKHG5O94827 1062 aa10.2□□□□□ -0.78
VRK1-202ENST00000553683 PRKAR2AP13861 404 aaKnown RBP10.17□□□□□ -0.78
VRK1-202ENST00000553683 VASPP50552 380 aaPredicted RBP10.17□□□□□ -0.78
VRK1-202ENST00000553683 CREBZFQ9NS37 354 aa10.17□□□□□ -0.78
VRK1-202ENST00000553683 MIER1Q8N108 512 aa10.15□□□□□ -0.78
VRK1-202ENST00000553683 ZBTB47Q9UFB7 747 aaPredicted RBP10.15□□□□□ -0.78
VRK1-202ENST00000553683 POTEHQ6S545 545 aa10.13□□□□□ -0.79
VRK1-202ENST00000553683 PLCD3Q8N3E9 789 aa10.13□□□□□ -0.79
VRK1-202ENST00000553683 FARP1Q9Y4F1 1045 aaPredicted RBP10.09□□□□□ -0.79
VRK1-202ENST00000553683 NPM1P06748 294 aaKnown RBP eCLIP10.08□□□□□ -0.8
VRK1-202ENST00000553683 MNX1P50219 401 aaPredicted RBP10.08□□□□□ -0.8
VRK1-202ENST00000553683 CHADLQ6NUI6 762 aa10.08□□□□□ -0.8
VRK1-202ENST00000553683 IFNLR1Q8IU57 520 aaPredicted RBP10.01□□□□□ -0.81
VRK1-202ENST00000553683 KLHL34Q8N239 644 aa9.97□□□□□ -0.81
VRK1-202ENST00000553683 C19orf67A6NJJ6 358 aa9.95□□□□□ -0.82
VRK1-202ENST00000553683 SPOCK2Q92563 424 aa9.94□□□□□ -0.82
VRK1-202ENST00000553683 NUBP1P53384 320 aa9.93□□□□□ -0.82
VRK1-202ENST00000553683 HAX1O00165 279 aa9.9□□□□□ -0.82
VRK1-202ENST00000553683 PAK3O75914 559 aaPredicted RBP9.9□□□□□ -0.82
VRK1-202ENST00000553683 CD44P16070 742 aaKnown RBP9.88□□□□□ -0.83
VRK1-202ENST00000553683 CLCN6P51797 869 aa9.87□□□□□ -0.83
VRK1-202ENST00000553683 FAM212AQ96EL1 285 aa9.87□□□□□ -0.83
VRK1-202ENST00000553683 GSE1Q14687 1217 aa9.86□□□□□ -0.83
VRK1-202ENST00000553683 RASEFQ8IZ41 740 aa9.85□□□□□ -0.83
VRK1-202ENST00000553683 ZNF579Q8NAF0 562 aaKnown RBP9.81□□□□□ -0.84
VRK1-202ENST00000553683 TRIM41Q8WV44 630 aa9.8□□□□□ -0.84
VRK1-202ENST00000553683 ZRANB1Q9UGI0 708 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms