RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 EFCAB5A4FU69 1503 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 LOC102724428A0A0B4J2F2 783 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 GSC2O15499 205 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 MICAL2O94851 1124 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 WISP1O95388 367 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 SEC13P55735 322 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 SIK1P57059 783 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 HDGFL1Q5TGJ6 251 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 IPO9Q96P70 1041 aaKnown RBP6.3□□□□□ -1.4
PTCD3-212ENST00000477520 QTRT2Q9H974 415 aaKnown RBP6.3□□□□□ -1.4
PTCD3-212ENST00000477520 CLIP1P30622 1438 aa6.3□□□□□ -1.4
PTCD3-212ENST00000477520 OPLAHO14841 1288 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 FAM43AQ8N2R8 423 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 GALNT11Q8NCW6 608 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 NSUN5Q96P11 429 aaKnown RBP6.29□□□□□ -1.4
PTCD3-212ENST00000477520 HINFPQ9BQA5 517 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 C11orf16Q9NQ32 467 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 TRIM33Q9UPN9 1127 aa6.29□□□□□ -1.4
PTCD3-212ENST00000477520 PTPRGP23470 1445 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 PRR19A6NJB7 356 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 DHX15O43143 795 aaKnown RBP6.28□□□□□ -1.4
PTCD3-212ENST00000477520 IGFBP4P22692 258 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 NFIAQ12857 509 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 DTX1Q86Y01 620 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 KRTAP4-9Q9BYQ8 210 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 C7orf69Q9H7B7 122 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 SRA1Q9HD15 236 aaKnown RBP6.28□□□□□ -1.4
PTCD3-212ENST00000477520 KCNK4Q9NYG8 393 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 RTCBQ9Y3I0 505 aaKnown RBP6.28□□□□□ -1.4
PTCD3-212ENST00000477520 ARHGEF11O15085 1522 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 DISP1Q96F81 1524 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 KIAA0556O60303 1618 aa6.28□□□□□ -1.4
PTCD3-212ENST00000477520 HMX2A2RU54 273 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 MMP20O60882 483 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 EGFRP00533 1210 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 ARID4AP29374 1257 aaPredicted RBP6.27□□□□□ -1.41
PTCD3-212ENST00000477520 MAP4K3Q8IVH8 894 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 TRIM42Q8IWZ5 723 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 WWC1Q8IX03 1113 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 SAMD9Q5K651 1589 aa6.27□□□□□ -1.41
PTCD3-212ENST00000477520 FMN1Q68DA7 1419 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 TM4SF5O14894 197 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 ANP32CO43423 234 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 RRP9O43818 475 aaKnown RBP6.26□□□□□ -1.41
PTCD3-212ENST00000477520 XYLBO75191 536 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 ADGRE2Q9UHX3 823 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 ARHGAP35Q9NRY4 1499 aa6.26□□□□□ -1.41
PTCD3-212ENST00000477520 RIMBP3CA6NJZ7 1639 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 RIMBP3BA6NNM3 1639 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 RIMBP3Q9UFD9 1639 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 GHRHP01286 108 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 DPYDQ12882 1025 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 CRTC2Q53ET0 693 aaPredicted RBP6.25□□□□□ -1.41
PTCD3-212ENST00000477520 RNF43Q68DV7 783 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 INTS5Q6P9B9 1019 aaKnown RBP6.25□□□□□ -1.41
PTCD3-212ENST00000477520 FAM46AQ96IP4 442 aaKnown RBP6.25□□□□□ -1.41
PTCD3-212ENST00000477520 KCNMB2Q9Y691 235 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 DHX57Q6P158 1386 aaKnown RBP6.25□□□□□ -1.41
PTCD3-212ENST00000477520 FHOD3Q2V2M9 1422 aa6.25□□□□□ -1.41
PTCD3-212ENST00000477520 ERCC6L2Q5T890 1561 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 LINC01387J3KSC0 135 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 PSAPP07602 524 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 HOXD8P13378 290 aaPredicted RBP6.24□□□□□ -1.41
PTCD3-212ENST00000477520 GRIK1P39086 918 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 C11orf91Q3C1V1 193 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 CYB5RLQ6IPT4 315 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 TXNDC11Q6PKC3 985 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 ADAMTSL4Q6UY14 1074 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 KIAA1211Q6ZU35 1233 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 ACAD11Q709F0 780 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 RGL4Q8IZJ4 473 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 CMTR1Q8N1G2 835 aaKnown RBP6.24□□□□□ -1.41
PTCD3-212ENST00000477520 UTP4Q969X6 686 aaKnown RBP6.24□□□□□ -1.41
PTCD3-212ENST00000477520 LRFN2Q9ULH4 789 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 PPME1Q9Y570 386 aa6.24□□□□□ -1.41
PTCD3-212ENST00000477520 WNT11O96014 354 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 JAG1P78504 1218 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 PTK7Q13308 1070 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 DCAF11Q8TEB1 546 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 MYO19Q96H55 970 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 DBNDD2Q9BQY9 259 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 TFIP11Q9UBB9 837 aaKnown RBP6.23□□□□□ -1.41
PTCD3-212ENST00000477520 MAFBQ9Y5Q3 323 aaPredicted RBP6.23□□□□□ -1.41
PTCD3-212ENST00000477520 UACAQ9BZF9 1416 aa6.23□□□□□ -1.41
PTCD3-212ENST00000477520 ARAP1Q96P48 1450 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 CD68P34810 354 aaPredicted RBP6.22□□□□□ -1.41
PTCD3-212ENST00000477520 SOX18P35713 384 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 MYRFLQ96LU7 910 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 CARD10Q9BWT7 1032 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 CEP41Q9BYV8 373 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 UHRF1BP1LA0JNW5 1464 aa6.22□□□□□ -1.41
PTCD3-212ENST00000477520 DDX3YO15523 660 aaKnown RBP6.21□□□□□ -1.42
PTCD3-212ENST00000477520 WEE1P30291 646 aa6.21□□□□□ -1.42
PTCD3-212ENST00000477520 HOXA10P31260 410 aaPredicted RBP6.21□□□□□ -1.42
PTCD3-212ENST00000477520 UVSSAQ2YD98 709 aa6.21□□□□□ -1.42
PTCD3-212ENST00000477520 COL13A1Q5TAT6 717 aaPredicted RBP6.21□□□□□ -1.42
PTCD3-212ENST00000477520 LARP1Q6PKG0 1096 aaKnown RBP6.21□□□□□ -1.42
PTCD3-212ENST00000477520 TREML1Q86YW5 311 aa6.21□□□□□ -1.42
PTCD3-212ENST00000477520 ABI1Q8IZP0 508 aa6.21□□□□□ -1.42
PTCD3-212ENST00000477520 SHKBP1Q8TBC3 707 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms