RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 AEBP2Q6ZN18 517 aaPredicted RBP23.19■■□□□ 1.3
PTCD3-212ENST00000477520 CHIC1Q5VXU3 224 aa21.71■■□□□ 1.07
PTCD3-212ENST00000477520 SENP3Q9H4L4 574 aaPredicted RBP19.71■□□□□ 0.75
PTCD3-212ENST00000477520 PHF23Q9BUL5 403 aaPredicted RBP19.47■□□□□ 0.71
PTCD3-212ENST00000477520 FOXD1Q16676 465 aa18.48■□□□□ 0.55
PTCD3-212ENST00000477520 POTEDQ86YR6 584 aa17.39■□□□□ 0.37
PTCD3-212ENST00000477520 MSH5O43196 834 aa17.3■□□□□ 0.36
PTCD3-212ENST00000477520 PLPPR3Q6T4P5 718 aa17.19■□□□□ 0.34
PTCD3-212ENST00000477520 PIAS4Q8N2W9 510 aaPredicted RBP17.17■□□□□ 0.34
PTCD3-212ENST00000477520 PPP6R1Q9UPN7 881 aa17.13■□□□□ 0.33
PTCD3-212ENST00000477520 ADRA2BP18089 450 aa17.04■□□□□ 0.32
PTCD3-212ENST00000477520 MAPK8IP2Q13387 824 aaPredicted RBP15.74■□□□□ 0.11
PTCD3-212ENST00000477520 DMRT2Q9Y5R5 561 aa15.62■□□□□ 0.09
PTCD3-212ENST00000477520 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
PTCD3-212ENST00000477520 PPP4R3CPQ6ZMV5 832 aa15.07■□□□□ 0
PTCD3-212ENST00000477520 CACNB1Q02641 598 aaPredicted RBP15.03■□□□□ -0
PTCD3-212ENST00000477520 DCAF8L1A6NGE4 600 aa14.99□□□□□ -0.01
PTCD3-212ENST00000477520 HOXD11P31277 338 aaPredicted RBP14.95□□□□□ -0.02
PTCD3-212ENST00000477520 CNKSR2Q8WXI2 1034 aa14.81□□□□□ -0.04
PTCD3-212ENST00000477520 RNF39Q9H2S5 420 aa14.79□□□□□ -0.04
PTCD3-212ENST00000477520 RNF216Q9NWF9 866 aaPredicted RBP14.75□□□□□ -0.05
PTCD3-212ENST00000477520 C1QBPQ07021 282 aaKnown RBP14.51□□□□□ -0.09
PTCD3-212ENST00000477520 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
PTCD3-212ENST00000477520 NCBP3Q53F19 620 aaKnown RBP14.34□□□□□ -0.11
PTCD3-212ENST00000477520 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
PTCD3-212ENST00000477520 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.22□□□□□ -0.137e-11■■□□□ 11.9
PTCD3-212ENST00000477520 U3KPZ7 1027 aaPredicted RBP13.94□□□□□ -0.18
PTCD3-212ENST00000477520 SPINK5Q9NQ38 1064 aaPredicted RBP13.84□□□□□ -0.19
PTCD3-212ENST00000477520 DSG3P32926 999 aa13.78□□□□□ -0.2
PTCD3-212ENST00000477520 CAPN15O75808 1086 aa13.77□□□□□ -0.21
PTCD3-212ENST00000477520 KCNA4P22459 653 aa13.76□□□□□ -0.21
PTCD3-212ENST00000477520 SLC4A2P04920 1241 aa13.68□□□□□ -0.22
PTCD3-212ENST00000477520 POTEHQ6S545 545 aa13.56□□□□□ -0.24
PTCD3-212ENST00000477520 TRHP20396 242 aaPredicted RBP13.5□□□□□ -0.25
PTCD3-212ENST00000477520 ABCB7O75027 752 aa13.47□□□□□ -0.25
PTCD3-212ENST00000477520 ZNF219Q9P2Y4 722 aaPredicted RBP13.41□□□□□ -0.26
PTCD3-212ENST00000477520 APLP2Q06481 763 aa13.38□□□□□ -0.27
PTCD3-212ENST00000477520 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.34□□□□□ -0.27
PTCD3-212ENST00000477520 HNRNPUL2Q1KMD3 747 aaKnown RBP13.34□□□□□ -0.27
PTCD3-212ENST00000477520 SAMD1Q6SPF0 538 aaPredicted RBP13.29□□□□□ -0.28
PTCD3-212ENST00000477520 MYCNP04198 464 aaPredicted RBP13.11□□□□□ -0.31
PTCD3-212ENST00000477520 POLA2Q14181 598 aa13.08□□□□□ -0.32
PTCD3-212ENST00000477520 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
PTCD3-212ENST00000477520 CHRDL2Q6WN34 429 aa12.94□□□□□ -0.34
PTCD3-212ENST00000477520 ATF5Q9Y2D1 282 aaPredicted RBP12.93□□□□□ -0.34
PTCD3-212ENST00000477520 SLC4A1APQ9BWU0 796 aaKnown RBP12.89□□□□□ -0.35
PTCD3-212ENST00000477520 FOXD4L1Q9NU39 408 aa12.86□□□□□ -0.35
PTCD3-212ENST00000477520 AKT1S1Q96B36 256 aa12.75□□□□□ -0.37
PTCD3-212ENST00000477520 ZBTB12Q9Y330 459 aaPredicted RBP12.71□□□□□ -0.37
PTCD3-212ENST00000477520 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
PTCD3-212ENST00000477520 ZBTB22O15209 634 aa12.68□□□□□ -0.38
PTCD3-212ENST00000477520 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
PTCD3-212ENST00000477520 PIP4P2Q8N4L2 257 aa12.6□□□□□ -0.39
PTCD3-212ENST00000477520 SP7Q8TDD2 431 aaPredicted RBP12.58□□□□□ -0.4
PTCD3-212ENST00000477520 PITPNM1O00562 1244 aa12.55□□□□□ -0.4
PTCD3-212ENST00000477520 FXR2P51116 673 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTCD3-212ENST00000477520 ATXN8OSP0DMR3 200 aa12.45□□□□□ -0.42
PTCD3-212ENST00000477520 HAX1O00165 279 aa12.41□□□□□ -0.42
PTCD3-212ENST00000477520 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
PTCD3-212ENST00000477520 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
PTCD3-212ENST00000477520 EVX2Q03828 476 aa12.34□□□□□ -0.43
PTCD3-212ENST00000477520 SPDYE2Q495Y8 402 aa12.34□□□□□ -0.43
PTCD3-212ENST00000477520 FBLN2P98095 1184 aa12.32□□□□□ -0.44
PTCD3-212ENST00000477520 MKRN4PQ13434 485 aaPredicted RBP12.31□□□□□ -0.44
PTCD3-212ENST00000477520 CLEC11AQ9Y240 323 aa12.21□□□□□ -0.45
PTCD3-212ENST00000477520 PRKAR2AP13861 404 aaKnown RBP12.2□□□□□ -0.46
PTCD3-212ENST00000477520 SPDYE1Q8NFV5 336 aaPredicted RBP12.19□□□□□ -0.46
PTCD3-212ENST00000477520 SSUH2Q9Y2M2 353 aa12.19□□□□□ -0.46
PTCD3-212ENST00000477520 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-212ENST00000477520 C19orf67A6NJJ6 358 aa12.08□□□□□ -0.48
PTCD3-212ENST00000477520 CHADLQ6NUI6 762 aa12.05□□□□□ -0.48
PTCD3-212ENST00000477520 PABPN1Q86U42 306 aaKnown RBP eCLIP12.01□□□□□ -0.49
PTCD3-212ENST00000477520 GABBR2O75899 941 aa11.98□□□□□ -0.49
PTCD3-212ENST00000477520 PRR29P0C7W0 189 aa11.95□□□□□ -0.5
PTCD3-212ENST00000477520 CSRNP3Q8WYN3 585 aa11.84□□□□□ -0.51
PTCD3-212ENST00000477520 FARP1Q9Y4F1 1045 aaPredicted RBP11.81□□□□□ -0.52
PTCD3-212ENST00000477520 LHX8Q68G74 356 aa11.8□□□□□ -0.52
PTCD3-212ENST00000477520 CD44P16070 742 aaKnown RBP11.79□□□□□ -0.52
PTCD3-212ENST00000477520 POTEIP0CG38 1075 aa11.77□□□□□ -0.53
PTCD3-212ENST00000477520 CREBZFQ9NS37 354 aa11.65□□□□□ -0.54
PTCD3-212ENST00000477520 ZNF579Q8NAF0 562 aaKnown RBP11.6□□□□□ -0.55
PTCD3-212ENST00000477520 ZRANB1Q9UGI0 708 aa11.6□□□□□ -0.55
PTCD3-212ENST00000477520 CLCN6P51797 869 aa11.58□□□□□ -0.56
PTCD3-212ENST00000477520 DCBLD2Q96PD2 775 aa11.55□□□□□ -0.56
PTCD3-212ENST00000477520 SPDYE4A6NLX3 237 aa11.54□□□□□ -0.56
PTCD3-212ENST00000477520 EHMT2Q96KQ7 1210 aa11.54□□□□□ -0.56
PTCD3-212ENST00000477520 STAG3Q9UJ98 1225 aa11.54□□□□□ -0.56
PTCD3-212ENST00000477520 GALR2O43603 387 aaPredicted RBP11.52□□□□□ -0.57
PTCD3-212ENST00000477520 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
PTCD3-212ENST00000477520 MNX1P50219 401 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-212ENST00000477520 POTEB2H3BUK9 544 aa11.39□□□□□ -0.59
PTCD3-212ENST00000477520 PAK3O75914 559 aaPredicted RBP11.37□□□□□ -0.59
PTCD3-212ENST00000477520 OTUD5Q96G74 571 aa11.36□□□□□ -0.59
PTCD3-212ENST00000477520 PELP1Q8IZL8 1130 aaKnown RBP11.35□□□□□ -0.59
PTCD3-212ENST00000477520 NPM1P06748 294 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTCD3-212ENST00000477520 MS4A3Q96HJ5 214 aa11.28□□□□□ -0.6
PTCD3-212ENST00000477520 PROM2Q8N271 834 aa11.24□□□□□ -0.61
PTCD3-212ENST00000477520 PLSCR2Q9NRY7 297 aa11.24□□□□□ -0.61
PTCD3-212ENST00000477520 ASTLQ6HA08 431 aaPredicted RBP11.22□□□□□ -0.61
PTCD3-212ENST00000477520 ATMINO43313 823 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms