RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NMIQ13287 307 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-203ENST00000353578 HOMER3Q9NSC5 361 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 NOP2P46087 812 aaKnown RBP14.2□□□□□ -0.14
COL6A3-203ENST00000353578 DUSP27Q5VZP5 1158 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 GABPB2Q8TAK5 448 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-203ENST00000353578 GEMIN8Q9NWZ8 242 aaKnown RBP14.2□□□□□ -0.14
COL6A3-203ENST00000353578 ATP2C2O75185 946 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 SKIP12755 728 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 TTC39AQ5SRH9 613 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 CYP26C1Q6V0L0 522 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 PDE6BP35913 854 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 SAAL1Q96ER3 474 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 SELENOSQ9BQE4 189 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 PPP1R9AQ9ULJ8 1098 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 GJB2P29033 226 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 FCHSD1Q86WN1 690 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 CTTNBP2NLQ9P2B4 639 aa14.2□□□□□ -0.14
COL6A3-203ENST00000353578 PTPN23Q9H3S7 1636 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 LMNAP02545 664 aaKnown RBP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 RUFY3Q7L099 469 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 KLHL14Q9P2G3 628 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 FCHSD2O94868 740 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 SCINQ9Y6U3 715 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 ATP2B1P20020 1258 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 NCAPGQ9BPX3 1015 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 AKR1B15C9JRZ8 316 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 PPP2R5AQ15172 486 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 EVI5LQ96CN4 794 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 CCDC97Q96F63 343 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 NBPF3Q9H094 633 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 BCL2L12Q9HB09 334 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 MYO1AQ9UBC5 1043 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 U2AF2P26368 475 aaKnown RBP eCLIP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 HMGB2P26583 209 aaKnown RBP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 TUBB6Q9BUF5 446 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 STK3Q13188 491 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 ARHGAP45Q92619 1136 aa14.19□□□□□ -0.14
COL6A3-203ENST00000353578 CNOT10Q9H9A5 744 aaKnown RBP14.19□□□□□ -0.14
COL6A3-203ENST00000353578 CDCA7LQ96GN5 454 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 F13A1P00488 732 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 ELF2Q15723 593 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 CWC27Q6UX04 472 aaKnown RBP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 RRAGDQ9NQL2 400 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 RIPOR2Q9Y4F9 1068 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 ESRRGP62508 458 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 PNMA8AQ86V59 439 aaPredicted RBP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 DHX37Q8IY37 1157 aaKnown RBP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 CAPS2Q9BXY5 557 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 TSC1Q92574 1164 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 LMNB2Q03252 620 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 EXOC1Q9NV70 894 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 TMTC1Q8IUR5 882 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 PPP1R21Q6ZMI0 780 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 KRI1Q8N9T8 703 aaKnown RBP14.18□□□□□ -0.14
COL6A3-203ENST00000353578 NRBF2Q96F24 287 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 BATF3Q9NR55 127 aa14.18□□□□□ -0.14
COL6A3-203ENST00000353578 TTC22Q5TAA0 569 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 NUP58Q9BVL2 599 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 TXLNGQ9NUQ3 528 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 LMNB1P20700 586 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 NUCB1Q02818 461 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 AACSQ86V21 672 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 RAB17Q9H0T7 212 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 USP48Q86UV5 1035 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 UIMC1Q96RL1 719 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 TSC22D3Q99576 134 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 SYCE1Q8N0S2 351 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 ARMC2Q8NEN0 867 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 EXOSC9Q06265 439 aaKnown RBP14.17□□□□□ -0.14
COL6A3-203ENST00000353578 VIMP08670 466 aaKnown RBP14.17□□□□□ -0.14
COL6A3-203ENST00000353578 PRPF4BQ13523 1007 aaKnown RBP14.17□□□□□ -0.14
COL6A3-203ENST00000353578 VSIG1Q86XK7 387 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 PABPN1LA6NDY0 278 aaKnown RBP14.17□□□□□ -0.14
COL6A3-203ENST00000353578 NBPF6Q5VWK0 638 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 NBPF5PQ86XG9 351 aaPredicted RBP14.17□□□□□ -0.14
COL6A3-203ENST00000353578 VPS52Q8N1B4 723 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 NBPF4Q96M43 638 aa14.17□□□□□ -0.14
COL6A3-203ENST00000353578 FAM135AQ9P2D6 1515 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 MAN1A2O60476 641 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 CFAP221Q4G0U5 840 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 EHMT1Q9H9B1 1298 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 EIF2S2P20042 333 aaKnown RBP14.16□□□□□ -0.14
COL6A3-203ENST00000353578 PTGS1P23219 599 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 NME8Q8N427 588 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 SSRP1Q08945 709 aaKnown RBP14.16□□□□□ -0.14
COL6A3-203ENST00000353578 UBL4BQ8N7F7 174 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 BCAR3O75815 825 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 MATR3P43243 847 aaKnown RBP eCLIP14.16□□□□□ -0.14
COL6A3-203ENST00000353578 TMEM132AQ24JP5 1023 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 ARHGEF2Q92974 986 aaKnown RBP14.16□□□□□ -0.14
COL6A3-203ENST00000353578 TRIM47Q96LD4 638 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 PCYT1AP49585 367 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 PPP4R3AQ6IN85 833 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 CNPY4Q8N129 248 aa14.16□□□□□ -0.14
COL6A3-203ENST00000353578 RASIP1Q5U651 963 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 KLHDC4Q8TBB5 520 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 TTC41PQ6P2S7 1318 aa14.15□□□□□ -0.14
COL6A3-203ENST00000353578 CHUKO15111 745 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms