RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SEC62Q99442 399 aaKnown RBP7.9□□□□□ -1.15
VPS39-202ENST00000348544 BPIFA3Q9BQP9 254 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 FSD1Q9BTV5 496 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 FUT8Q9BYC5 575 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 BOLA2Q9H3K6 86 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 TMX1Q9H3N1 280 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 EFCC1Q9HA90 598 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 HMG20BQ9P0W2 317 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 PCDHA7Q9UN72 937 aa7.9□□□□□ -1.15
VPS39-202ENST00000348544 TOPAZ1Q8N9V7 1692 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 SBNO1A3KN83 1393 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 VWA3AA6NCI4 1184 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 DHX16O60231 1041 aaKnown RBP7.89□□□□□ -1.15
VPS39-202ENST00000348544 CHGBP05060 677 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 ATP1A3P13637 1013 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 HSP90B1P14625 803 aaKnown RBP7.89□□□□□ -1.15
VPS39-202ENST00000348544 NDUFA8P51970 172 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 IRX3P78415 501 aaPredicted RBP7.89□□□□□ -1.15
VPS39-202ENST00000348544 DPF2Q92785 391 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 SRRTQ9BXP5 876 aaKnown RBP7.89□□□□□ -1.15
VPS39-202ENST00000348544 KIAA1468Q9P260 1216 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 BIN1O00499 593 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 GUCY1B3Q02153 619 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 PTPN21Q16825 1174 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 RSRC2Q7L4I2 434 aaKnown RBP7.89□□□□□ -1.15
VPS39-202ENST00000348544 SRLQ86TD4 932 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 FBXO18Q8NFZ0 1043 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 NEK1Q96PY6 1258 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 WDR24Q96S15 920 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 SIL1Q9H173 461 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 ADAM21Q9UKJ8 722 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 RICTORQ6R327 1708 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 NWD1Q149M9 1564 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 AGLP35573 1532 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 TECPR2O15040 1411 aa7.89□□□□□ -1.15
VPS39-202ENST00000348544 PTPDC1A2A3K4 754 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 PFKFB2O60825 505 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 ALDH1L1O75891 902 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 LMOD1P29536 600 aaPredicted RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 CASQ1P31415 396 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 FANCCQ00597 558 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 PSME1Q06323 249 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 TAF7LQ5H9L4 462 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 STOX1Q6ZVD7 989 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 GOLGA5Q8TBA6 731 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 MRPS27Q92552 414 aaKnown RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 SDF4Q9BRK5 362 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 RRP15Q9Y3B9 282 aaKnown RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 CYP21A2P08686 494 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 TNNT3P45378 269 aaPredicted RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 LMAN1P49257 510 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 GPS2Q13227 327 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 CCDC129Q6ZRS4 1044 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 ERC1Q8IUD2 1116 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 TMEM139Q8IV31 216 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 GPR161Q8N6U8 529 aaKnown RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 EXOC4Q96A65 974 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 KAZALD1Q96I82 304 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 UTP14AQ9BVJ6 771 aaKnown RBP7.88□□□□□ -1.15
VPS39-202ENST00000348544 PARD6BQ9BYG5 372 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 SALL1Q9NSC2 1324 aa7.88□□□□□ -1.15
VPS39-202ENST00000348544 TPM1P09493 284 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 MAP3K9P80192 1104 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 C1QBPQ07021 282 aaKnown RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 FAM177A1Q8N128 213 aaPredicted RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 IQUBQ8NA54 791 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 ZNF396Q96N95 335 aaPredicted RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 LLPHQ9BRT6 129 aaKnown RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 NCOA5Q9HCD5 579 aaKnown RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 BABAM1Q9NWV8 329 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 PSD3Q9NYI0 1048 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 NEO1Q92859 1461 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 PLEKHG2Q9H7P9 1386 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 ROBO2Q9HCK4 1378 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 PLEKHG3A1L390 1219 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 TMEM232C9JQI7 657 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 KCNQ3O43525 872 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 EIF4A1P60842 406 aaKnown RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 PPP2R3AQ06190 1150 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 KRT32Q14532 448 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 ADALQ6DHV7 355 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 FOXR1Q6PIV2 292 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 ARFGAP3Q9NP61 516 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 MRFAP1Q9Y605 127 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.87□□□□□ -1.15
VPS39-202ENST00000348544 LAMA4Q16363 1823 aa7.87□□□□□ -1.15
VPS39-202ENST00000348544 A0A1W2PQ27 194 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 A0A1W2PQ64 194 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 A0A1W2PQD8 194 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 CCP110O43303 1012 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 NRDCO43847 1150 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 ACTN2P35609 894 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 NLRP12P59046 1061 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 CCT2P78371 535 aaKnown RBP7.86□□□□□ -1.15
VPS39-202ENST00000348544 APOBRQ0VD83 1088 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 LONRF2Q1L5Z9 754 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 CWF19L2Q2TBE0 894 aaKnown RBP7.86□□□□□ -1.15
VPS39-202ENST00000348544 NBPF6Q5VWK0 638 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 ATL3Q6DD88 541 aa7.86□□□□□ -1.15
VPS39-202ENST00000348544 ISM2Q6H9L7 571 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms