RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 EFCC1Q9HA90 598 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 KCND1Q9NSA2 647 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 PCDHA7Q9UN72 937 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 NRXN3Q9Y4C0 1643 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 ADAMTS13Q76LX8 1427 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 GNG11P61952 73 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 EAF2Q96CJ1 260 aaPredicted RBP15.65■□□□□ 0.1
SKA3-201ENST00000298260 ARFGAP3Q9NP61 516 aa15.65■□□□□ 0.1
SKA3-201ENST00000298260 EFCAB8A8MWE9 144 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 KCNA6P17658 529 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 LRRFIP1Q32MZ4 808 aaKnown RBP15.64■□□□□ 0.09
SKA3-201ENST00000298260 ILDR1Q86SU0 546 aaPredicted RBP15.64■□□□□ 0.09
SKA3-201ENST00000298260 GPATCH11Q8N954 259 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 CCDC150Q8NCX0 1101 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 GJB4Q9NTQ9 266 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 RCOR1Q9UKL0 485 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 MAP3K5Q99683 1374 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 XRN1Q8IZH2 1706 aaKnown RBP15.64■□□□□ 0.09
SKA3-201ENST00000298260 A0A0G2JLW4 131 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 VWA3AA6NCI4 1184 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 CCDC158Q5M9N0 1113 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 EVI5LQ96CN4 794 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 DESI2Q9BSY9 194 aa15.64■□□□□ 0.09
SKA3-201ENST00000298260 TTC41PQ6P2S7 1318 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 POLR3DP05423 398 aaPredicted RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 FANCCQ00597 558 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 KARSQ15046 597 aaKnown RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 ZRSR1Q15695 479 aaKnown RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 ICE2Q659A1 982 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 SIRT1Q96EB6 747 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 CHPF2Q9P2E5 772 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 CTAGE5O15320 804 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 PRR29P0C7W0 189 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 PPP2R3AQ06190 1150 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 APOBRQ0VD83 1088 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 NCAPHQ15003 741 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 LONRF2Q1L5Z9 754 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 IL17REQ8NFR9 667 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 GOLGA5Q8TBA6 731 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 NAT10Q9H0A0 1025 aaKnown RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 IMPACTQ9P2X3 320 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 PTPRUQ92729 1446 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 A0A0U1RQJ8 604 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 CTDNEP1O95476 244 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 ANKRD1Q15327 319 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 TSGA10IPQ3SY00 556 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 FMR1NBQ8N0W7 255 aaPredicted RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 ATRIPQ8WXE1 791 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 DHX58Q96C10 678 aa15.63■□□□□ 0.09
SKA3-201ENST00000298260 LTV1Q96GA3 475 aaPredicted RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 PUF60Q9UHX1 559 aaKnown RBP15.63■□□□□ 0.09
SKA3-201ENST00000298260 SETD1AO15047 1707 aaKnown RBP15.62■□□□□ 0.09
SKA3-201ENST00000298260 PHLPP2Q6ZVD8 1323 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 ACTN2P35609 894 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 CWF19L2Q2TBE0 894 aaKnown RBP15.62■□□□□ 0.09
SKA3-201ENST00000298260 RAB11FIP4Q86YS3 637 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 AK7Q96M32 723 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 EYA1Q99502 592 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 CCDC61Q9Y6R9 512 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 COL15A1P39059 1388 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 PRR36Q9H6K5 1346 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 PDILTQ8N807 584 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 KIAA1468Q9P260 1216 aa15.62■□□□□ 0.09
SKA3-201ENST00000298260 PTPDC1A2A3K4 754 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 KCNQ3O43525 872 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 CFAP100Q494V2 611 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 TOGARAM2Q6ZUX3 1019 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 HSD3B7Q9H2F3 369 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 CLIC4Q9Y696 253 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 GIGYF1O75420 1035 aaPredicted RBP15.61■□□□□ 0.09
SKA3-201ENST00000298260 BEND3Q5T5X7 828 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 NEK1Q96PY6 1258 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 ZSCAN16Q9H4T2 348 aaPredicted RBP15.61■□□□□ 0.09
SKA3-201ENST00000298260 CWC15Q9P013 229 aaKnown RBP15.61■□□□□ 0.09
SKA3-201ENST00000298260 FAN1Q9Y2M0 1017 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 JRKLQ9Y4A0 524 aa15.61■□□□□ 0.09
SKA3-201ENST00000298260 SASH1O94885 1247 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 SERPINC1P01008 464 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 NUTM2GQ5VZR2 741 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 NSUN7Q8NE18 718 aaKnown RBP15.6■□□□□ 0.09
SKA3-201ENST00000298260 PPP2R2CQ9Y2T4 447 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 USHBP1Q8N6Y0 703 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 MRPS27Q92552 414 aaKnown RBP15.6■□□□□ 0.09
SKA3-201ENST00000298260 NEDD4P46934 1319 aa15.6■□□□□ 0.09
SKA3-201ENST00000298260 TAF5LO75529 589 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 ADKP55263 362 aaKnown RBP15.59■□□□□ 0.09
SKA3-201ENST00000298260 UBASH3AP57075 661 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 EP400NLQ6ZTU2 488 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 DNAAF4Q8WXU2 420 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 ADGRL3Q9HAR2 1447 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 ARHGEF10O15013 1369 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 EIF3CLB5ME19 914 aaKnown RBP15.59■□□□□ 0.09
SKA3-201ENST00000298260 CYP21A2P08686 494 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 MTF1Q14872 753 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 STOX1Q6ZVD7 989 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 ANKLE2Q86XL3 938 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 GPR161Q8N6U8 529 aaKnown RBP15.59■□□□□ 0.09
SKA3-201ENST00000298260 EXOC4Q96A65 974 aa15.59■□□□□ 0.09
SKA3-201ENST00000298260 EIF3CQ99613 913 aaKnown RBP15.59■□□□□ 0.09
SKA3-201ENST00000298260 USP42Q9H9J4 1324 aaKnown RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms