RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 ZSCAN16Q9H4T2 348 aaPredicted RBP28.65■■■□□ 2.18
SPTSSA-201ENST00000298130 OSBP2Q969R2 916 aa28.65■■■□□ 2.18
SPTSSA-201ENST00000298130 SH3TC1Q8TE82 1336 aa28.65■■■□□ 2.18
SPTSSA-201ENST00000298130 ZMYM1Q5SVZ6 1142 aa28.64■■■□□ 2.18
SPTSSA-201ENST00000298130 PI16Q6UXB8 463 aa28.64■■■□□ 2.18
SPTSSA-201ENST00000298130 PDIA3P30101 505 aaKnown RBP28.64■■■□□ 2.18
SPTSSA-201ENST00000298130 EXOSC10Q01780 885 aaKnown RBP28.64■■■□□ 2.18
SPTSSA-201ENST00000298130 ILDR1Q86SU0 546 aaPredicted RBP28.64■■■□□ 2.18
SPTSSA-201ENST00000298130 WASHC4Q2M389 1173 aa28.63■■■□□ 2.17
SPTSSA-201ENST00000298130 AFDNP55196 1824 aaKnown RBP28.63■■■□□ 2.17
SPTSSA-201ENST00000298130 SCN11AQ9UI33 1791 aa28.63■■■□□ 2.17
SPTSSA-201ENST00000298130 POLR3DP05423 398 aaPredicted RBP28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 TRPM3Q9HCF6 1732 aaPredicted RBP28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 TPM3P06753 285 aa28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 CHAF1AQ13111 956 aaPredicted RBP28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 GOLGA6L19H0YKK7 550 aa28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 EYA2O00167 538 aa28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 SNW1Q13573 536 aaKnown RBP28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 HELLSQ9NRZ9 838 aa28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.62■■■□□ 2.17
SPTSSA-201ENST00000298130 RNF113AO15541 343 aaKnown RBP28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 SCARF1Q14162 830 aa28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 FSIP1Q8NA03 581 aa28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 CAMTA1Q9Y6Y1 1673 aa28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 IQCB1Q15051 598 aa28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 ADAMTS7Q9UKP4 1686 aa28.61■■■□□ 2.17
SPTSSA-201ENST00000298130 A0A1B0GVL5 298 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 FDPSP14324 419 aaKnown RBP28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 GTF2F1P35269 517 aaKnown RBP eCLIP28.6■■■□□ 2.174e-8■■■■□ 26
SPTSSA-201ENST00000298130 IL15P40933 162 aaPredicted RBP28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 CBX1P83916 185 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 GORABQ5T7V8 394 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 NAA30Q147X3 362 aaPredicted RBP28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 FILIP1Q7Z7B0 1213 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 ZNF592Q92610 1267 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 DSCC1Q9BVC3 393 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 RCOR1Q9UKL0 485 aa28.6■■■□□ 2.17
SPTSSA-201ENST00000298130 CCDC73Q6ZRK6 1079 aa28.59■■■□□ 2.17
SPTSSA-201ENST00000298130 SYNE4Q8N205 404 aa28.59■■■□□ 2.17
SPTSSA-201ENST00000298130 HMGB1P09429 215 aaKnown RBP28.59■■■□□ 2.17
SPTSSA-201ENST00000298130 PPP4R3BQ5MIZ7 849 aa28.59■■■□□ 2.17
SPTSSA-201ENST00000298130 DENND2AQ9ULE3 1009 aa28.58■■■□□ 2.17
SPTSSA-201ENST00000298130 SPDYE4A6NLX3 237 aa28.58■■■□□ 2.17
SPTSSA-201ENST00000298130 PKNOX2Q96KN3 472 aa28.58■■■□□ 2.17
SPTSSA-201ENST00000298130 LLPHQ9BRT6 129 aaKnown RBP28.58■■■□□ 2.17
SPTSSA-201ENST00000298130 BECN2A8MW95 431 aa28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 KINO60870 393 aaKnown RBP28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 NAA16Q6N069 864 aaPredicted RBP28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 PALLDQ8WX93 1383 aa28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 TOM1L2Q6ZVM7 507 aa28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 MTERF4Q7Z6M4 381 aaKnown RBP28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 FAM89AQ96GI7 184 aa28.57■■■□□ 2.16
SPTSSA-201ENST00000298130 USP27XA6NNY8 438 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 CCDC94Q9BW85 323 aaPredicted RBP28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 TNNT1P13805 278 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 PCDHA7Q9UN72 937 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 FOXP2O15409 715 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 ATP2B3Q16720 1220 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 CEP126Q9P2H0 1117 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 CLIC4Q9Y696 253 aa28.56■■■□□ 2.16
SPTSSA-201ENST00000298130 CARMIL3Q8ND23 1372 aa28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 ARFGEF2Q9Y6D5 1785 aa28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 TPD52L1Q16890 204 aaPredicted RBP28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 TTC39AQ5SRH9 613 aa28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 PUS7LQ9H0K6 701 aaKnown RBP28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 RFX7Q2KHR2 1363 aa28.55■■■□□ 2.16
SPTSSA-201ENST00000298130 AOPEPQ8N6M6 819 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 NKX2-3Q8TAU0 364 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 XAGE2Q96GT9 111 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 TMEM94Q12767 1356 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 BIN1O00499 593 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 STX1AQ16623 288 aa28.54■■■□□ 2.16
SPTSSA-201ENST00000298130 FGAP02671 866 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 RXRAP19793 462 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 ZAP70P43403 619 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 ISM2Q6H9L7 571 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 ENGASEQ8NFI3 743 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 SDF4Q9BRK5 362 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 SALL1Q9NSC2 1324 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 DHX40Q8IX18 779 aaKnown RBP28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 AGXT2Q9BYV1 514 aa28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 TRMT1Q9NXH9 659 aaKnown RBP28.53■■■□□ 2.16
SPTSSA-201ENST00000298130 KLF18A0A0U1RQI7 1052 aa28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 CCDC57Q2TAC2 916 aa28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 ZCRB1Q8TBF4 217 aaKnown RBP28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 ZNF396Q96N95 335 aaPredicted RBP28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 NDUFA8P51970 172 aa28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 FAM160A1Q05DH4 1040 aa28.52■■■□□ 2.16
SPTSSA-201ENST00000298130 LAMA4Q16363 1823 aa28.51■■■□□ 2.15
SPTSSA-201ENST00000298130 SF3A1Q15459 793 aaKnown RBP28.51■■■□□ 2.15
SPTSSA-201ENST00000298130 KLHL34Q8N239 644 aa28.51■■■□□ 2.15
SPTSSA-201ENST00000298130 GOLGA8BA8MQT2 603 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 PRC1O43663 620 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 U2AF2P26368 475 aaKnown RBP eCLIP28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 PDCL2Q8N4E4 241 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 TAF7LQ5H9L4 462 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 LRRC8AQ8IWT6 810 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 CCDC191Q8NCU4 936 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 AIFM3Q96NN9 605 aa28.5■■■□□ 2.15
SPTSSA-201ENST00000298130 CCDC158Q5M9N0 1113 aa28.5■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms