RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 KCNB2Q92953 911 aa25.22■■□□□ 1.63
YBX3-202ENST00000279550 TNPO1Q92973 898 aaKnown RBP25.22■■□□□ 1.63
YBX3-202ENST00000279550 TMX3Q96JJ7 454 aa25.22■■□□□ 1.63
YBX3-202ENST00000279550 RFX7Q2KHR2 1363 aa25.22■■□□□ 1.63
YBX3-202ENST00000279550 ADORA1P30542 326 aa25.21■■□□□ 1.63
YBX3-202ENST00000279550 PRPF40BQ6NWY9 871 aaKnown RBP25.21■■□□□ 1.63
YBX3-202ENST00000279550 ZNF589Q86UQ0 364 aaPredicted RBP25.21■■□□□ 1.63
YBX3-202ENST00000279550 BSDC1Q9NW68 430 aaPredicted RBP25.21■■□□□ 1.63
YBX3-202ENST00000279550 NOL8Q76FK4 1167 aaKnown RBP25.2■■□□□ 1.63
YBX3-202ENST00000279550 RBM8AQ9Y5S9 174 aaKnown RBP25.2■■□□□ 1.63
YBX3-202ENST00000279550 SPEF2Q9C093 1822 aa25.2■■□□□ 1.62
YBX3-202ENST00000279550 KLRG2A4D1S0 409 aaPredicted RBP25.2■■□□□ 1.62
YBX3-202ENST00000279550 PDE8BO95263 885 aa25.2■■□□□ 1.62
YBX3-202ENST00000279550 RPS8P62241 208 aaKnown RBP25.2■■□□□ 1.62
YBX3-202ENST00000279550 NECTIN1Q15223 517 aa25.2■■□□□ 1.62
YBX3-202ENST00000279550 SLC16A10Q8TF71 515 aa25.2■■□□□ 1.62
YBX3-202ENST00000279550 BRIP1Q9BX63 1249 aa25.2■■□□□ 1.62
YBX3-202ENST00000279550 TAF1P21675 1872 aa25.19■■□□□ 1.62
YBX3-202ENST00000279550 MCM2P49736 904 aa25.19■■□□□ 1.62
YBX3-202ENST00000279550 RPGRQ92834 1020 aaKnown RBP25.19■■□□□ 1.62
YBX3-202ENST00000279550 MAP4K1Q92918 833 aa25.19■■□□□ 1.62
YBX3-202ENST00000279550 GOLIM4O00461 696 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 KBTBD3Q8NAB2 608 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 TTC14Q96N46 770 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 PAG1Q9NWQ8 432 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 CHRNDQ07001 517 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 GRAPQ13588 217 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 CUL4AQ13619 759 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 ATP2B3Q16720 1220 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 HELBQ8NG08 1087 aaPredicted RBP25.17■■□□□ 1.62
YBX3-202ENST00000279550 GRAPLQ8TC17 118 aaPredicted RBP25.17■■□□□ 1.62
YBX3-202ENST00000279550 XAGE2Q96GT9 111 aa25.17■■□□□ 1.62
YBX3-202ENST00000279550 IFIT1P09914 478 aaKnown RBP25.16■■□□□ 1.62
YBX3-202ENST00000279550 CPA1P15085 419 aa25.16■■□□□ 1.62
YBX3-202ENST00000279550 ADCK5Q3MIX3 580 aa25.16■■□□□ 1.62
YBX3-202ENST00000279550 CREB3L3Q68CJ9 461 aa25.16■■□□□ 1.62
YBX3-202ENST00000279550 SEC62Q99442 399 aaKnown RBP25.16■■□□□ 1.62
YBX3-202ENST00000279550 ANKRD31Q8N7Z5 1873 aa25.16■■□□□ 1.62
YBX3-202ENST00000279550 TAF5LO75529 589 aa25.15■■□□□ 1.62
YBX3-202ENST00000279550 PUM3Q15397 648 aaKnown RBP25.15■■□□□ 1.62
YBX3-202ENST00000279550 CCDC129Q6ZRS4 1044 aa25.15■■□□□ 1.62
YBX3-202ENST00000279550 SLC27A2O14975 620 aa25.15■■□□□ 1.62
YBX3-202ENST00000279550 SLFNL1Q499Z3 407 aa25.15■■□□□ 1.62
YBX3-202ENST00000279550 RBM17Q96I25 401 aaKnown RBP25.15■■□□□ 1.62
YBX3-202ENST00000279550 MINPP1Q9UNW1 487 aa25.15■■□□□ 1.62
YBX3-202ENST00000279550 FGFR2P21802 821 aa25.14■■□□□ 1.61
YBX3-202ENST00000279550 HOXA10P31260 410 aaPredicted RBP25.14■■□□□ 1.61
YBX3-202ENST00000279550 PDE6BP35913 854 aa25.14■■□□□ 1.61
YBX3-202ENST00000279550 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.14■■□□□ 1.61
YBX3-202ENST00000279550 CWC22Q9HCG8 908 aaKnown RBP25.14■■□□□ 1.61
YBX3-202ENST00000279550 KCNJ4P48050 445 aa25.13■■□□□ 1.61
YBX3-202ENST00000279550 PKP1Q13835 747 aa25.13■■□□□ 1.61
YBX3-202ENST00000279550 LPIN2Q92539 896 aa25.13■■□□□ 1.61
YBX3-202ENST00000279550 JAKMIP1Q96N16 626 aaKnown RBP25.13■■□□□ 1.61
YBX3-202ENST00000279550 TAF6LQ9Y6J9 622 aa25.13■■□□□ 1.61
YBX3-202ENST00000279550 CYP2E1P05181 493 aaPredicted RBP25.12■■□□□ 1.61
YBX3-202ENST00000279550 CASTP20810 708 aaKnown RBP25.12■■□□□ 1.61
YBX3-202ENST00000279550 AK2P54819 239 aa25.12■■□□□ 1.61
YBX3-202ENST00000279550 SCARF1Q14162 830 aa25.12■■□□□ 1.61
YBX3-202ENST00000279550 TTC39AQ5SRH9 613 aa25.12■■□□□ 1.61
YBX3-202ENST00000279550 GORABQ5T7V8 394 aa25.12■■□□□ 1.61
YBX3-202ENST00000279550 TM6SF1Q9BZW5 370 aa25.12■■□□□ 1.61
YBX3-202ENST00000279550 SRGNP10124 158 aa25.11■■□□□ 1.61
YBX3-202ENST00000279550 COL9A3Q14050 684 aaPredicted RBP25.11■■□□□ 1.61
YBX3-202ENST00000279550 R3HDM1Q15032 1099 aaKnown RBP25.11■■□□□ 1.61
YBX3-202ENST00000279550 RUFY3Q7L099 469 aa25.11■■□□□ 1.61
YBX3-202ENST00000279550 CRAMP1Q96RY5 1269 aa25.11■■□□□ 1.61
YBX3-202ENST00000279550 ZSWIM6Q9HCJ5 1215 aa25.11■■□□□ 1.61
YBX3-202ENST00000279550 SNAP23O00161 211 aa25.1■■□□□ 1.61
YBX3-202ENST00000279550 MCMDC2Q4G0Z9 681 aa25.1■■□□□ 1.61
YBX3-202ENST00000279550 CCDC158Q5M9N0 1113 aa25.1■■□□□ 1.61
YBX3-202ENST00000279550 IL27Q8NEV9 243 aa25.1■■□□□ 1.61
YBX3-202ENST00000279550 RPAP1Q9BWH6 1393 aaPredicted RBP25.1■■□□□ 1.61
YBX3-202ENST00000279550 SLC5A1P13866 664 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 GSE1Q14687 1217 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 LARP6Q9BRS8 491 aaKnown RBP25.09■■□□□ 1.61
YBX3-202ENST00000279550 A0A1B0GUL6 1792 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 NPR1P16066 1061 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 NUCB2P80303 420 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 ZMYM1Q5SVZ6 1142 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 ZDHHC9Q9Y397 364 aa25.09■■□□□ 1.61
YBX3-202ENST00000279550 BBOX1O75936 387 aa25.08■■□□□ 1.61
YBX3-202ENST00000279550 ANKRD2Q9GZV1 360 aa25.08■■□□□ 1.61
YBX3-202ENST00000279550 ZBTB7AO95365 584 aa25.07■■□□□ 1.6
YBX3-202ENST00000279550 ZKSCAN1P17029 563 aaPredicted RBP25.07■■□□□ 1.6
YBX3-202ENST00000279550 FKBP4Q02790 459 aaKnown RBP eCLIP25.07■■□□□ 1.6
YBX3-202ENST00000279550 INTS4Q96HW7 963 aaKnown RBP25.07■■□□□ 1.6
YBX3-202ENST00000279550 GBP4Q96PP9 640 aa25.07■■□□□ 1.6
YBX3-202ENST00000279550 PDRG1Q9NUG6 133 aa25.07■■□□□ 1.6
YBX3-202ENST00000279550 ARAP2Q8WZ64 1704 aa25.07■■□□□ 1.6
YBX3-202ENST00000279550 COL11A2P13942 1736 aaPredicted RBP25.06■■□□□ 1.6
YBX3-202ENST00000279550 DDX11L8A8MPP1 907 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 RNF113AO15541 343 aaKnown RBP25.06■■□□□ 1.6
YBX3-202ENST00000279550 UBE4AQ14139 1066 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 PI16Q6UXB8 463 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 CLEC17AQ6ZS10 378 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 MASTLQ96GX5 879 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 MTFR1LQ9H019 292 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 HELLSQ9NRZ9 838 aa25.06■■□□□ 1.6
YBX3-202ENST00000279550 CYP46A1Q9Y6A2 500 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms