RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 STX1AQ16623 288 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 HAUS7Q99871 368 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 CACNA1FO60840 1977 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 E7EWF7 191 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 CDK11BP21127 795 aaKnown RBP14.78□□□□□ -0.04
LIG1-201ENST00000263274 CEP57L1Q8IYX8 460 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 PUS3Q9BZE2 481 aaKnown RBP14.78□□□□□ -0.04
LIG1-201ENST00000263274 GOLPH3LQ9H4A5 285 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 CEP126Q9P2H0 1117 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 ZNF609O15014 1411 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 NPHP4O75161 1426 aaPredicted RBP14.78□□□□□ -0.04
LIG1-201ENST00000263274 TOPAZ1Q8N9V7 1692 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 COL15A1P39059 1388 aa14.78□□□□□ -0.04
LIG1-201ENST00000263274 RXRAP19793 462 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 PIP4K2BP78356 416 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 TTC39AQ5SRH9 613 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 RALYLQ86SE5 291 aaKnown RBP14.77□□□□□ -0.04
LIG1-201ENST00000263274 PTPN14Q15678 1187 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 CEP135Q66GS9 1140 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 TDRD7Q8NHU6 1098 aaKnown RBP14.77□□□□□ -0.04
LIG1-201ENST00000263274 ANO10Q9NW15 660 aa14.77□□□□□ -0.04
LIG1-201ENST00000263274 ERBB3P21860 1342 aa14.77□□□□□ -0.05
LIG1-201ENST00000263274 A0A1B0GUL7 405 aa14.77□□□□□ -0.05
LIG1-201ENST00000263274 CCDC69A6NI79 296 aa14.77□□□□□ -0.05
LIG1-201ENST00000263274 HSPD1P10809 573 aaKnown RBP14.77□□□□□ -0.05
LIG1-201ENST00000263274 ZSCAN20P17040 1043 aaPredicted RBP14.77□□□□□ -0.05
LIG1-201ENST00000263274 GTF2E1P29083 439 aaPredicted RBP14.77□□□□□ -0.05
LIG1-201ENST00000263274 C8orf76Q96K31 380 aa14.77□□□□□ -0.05
LIG1-201ENST00000263274 HMGB1P09429 215 aaKnown RBP14.76□□□□□ -0.05
LIG1-201ENST00000263274 MARCKSP29966 332 aaPredicted RBP14.76□□□□□ -0.05
LIG1-201ENST00000263274 KLF18A0A0U1RQI7 1052 aa14.76□□□□□ -0.05
LIG1-201ENST00000263274 USP27XA6NNY8 438 aa14.76□□□□□ -0.05
LIG1-201ENST00000263274 ORC3Q9UBD5 711 aaPredicted RBP14.76□□□□□ -0.05
LIG1-201ENST00000263274 GOLGA8BA8MQT2 603 aa14.76□□□□□ -0.05
LIG1-201ENST00000263274 PFKFB2O60825 505 aa14.76□□□□□ -0.05
LIG1-201ENST00000263274 RFX5P48382 616 aaPredicted RBP14.76□□□□□ -0.05
LIG1-201ENST00000263274 CWC25Q9NXE8 425 aaPredicted RBP14.76□□□□□ -0.05
LIG1-201ENST00000263274 CCDC57Q2TAC2 916 aa14.75□□□□□ -0.05
LIG1-201ENST00000263274 HSP90AA4PQ58FG1 418 aa14.75□□□□□ -0.05
LIG1-201ENST00000263274 CCDC158Q5M9N0 1113 aa14.75□□□□□ -0.05
LIG1-201ENST00000263274 SAMD1Q6SPF0 538 aaPredicted RBP14.75□□□□□ -0.05
LIG1-201ENST00000263274 TOMM22Q9NS69 142 aa14.75□□□□□ -0.05
LIG1-201ENST00000263274 ATF3P18847 181 aa14.75□□□□□ -0.05
LIG1-201ENST00000263274 CYP27B1O15528 508 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 CTDNEP1O95476 244 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 PDIA3P30101 505 aaKnown RBP14.74□□□□□ -0.05
LIG1-201ENST00000263274 TMC6Q7Z403 805 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 PLA2G4DQ86XP0 818 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 HOMER1Q86YM7 354 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 NAT10Q9H0A0 1025 aaKnown RBP14.74□□□□□ -0.05
LIG1-201ENST00000263274 UTYO14607 1347 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 PTPN21Q16825 1174 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 USPL1Q5W0Q7 1092 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 PI16Q6UXB8 463 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 LRRC8AQ8IWT6 810 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 PCDHA7Q9UN72 937 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 FAM160A1Q05DH4 1040 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 ZNF771Q7L3S4 317 aaPredicted RBP14.74□□□□□ -0.05
LIG1-201ENST00000263274 PLBD2Q8NHP8 589 aa14.74□□□□□ -0.05
LIG1-201ENST00000263274 MRPS27Q92552 414 aaKnown RBP14.74□□□□□ -0.05
LIG1-201ENST00000263274 CGNQ9P2M7 1197 aaKnown RBP14.74□□□□□ -0.05
LIG1-201ENST00000263274 CTAGE5O15320 804 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 RNF113AO15541 343 aaKnown RBP14.73□□□□□ -0.05
LIG1-201ENST00000263274 ATP2B1P20020 1258 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 IMMTQ16891 758 aaKnown RBP14.73□□□□□ -0.05
LIG1-201ENST00000263274 TSGA10IPQ3SY00 556 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 FAM177A1Q8N128 213 aaPredicted RBP14.73□□□□□ -0.05
LIG1-201ENST00000263274 CLIC4Q9Y696 253 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 SMTNL1A8MU46 457 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 LMOD1P29536 600 aaPredicted RBP14.73□□□□□ -0.05
LIG1-201ENST00000263274 UTP14CQ5TAP6 766 aaKnown RBP14.73□□□□□ -0.05
LIG1-201ENST00000263274 TOM1L2Q6ZVM7 507 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 DCAF5Q96JK2 942 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 RCOR1Q9UKL0 485 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 KAT6BQ8WYB5 2073 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 M0R2C6 588 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 PRC1O43663 620 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 ADORA1P30542 326 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 NDUFA8P51970 172 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 TRDNQ13061 729 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 CCDC82Q8N4S0 544 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 OSBP2Q969R2 916 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 IFNKQ9P0W0 207 aa14.73□□□□□ -0.05
LIG1-201ENST00000263274 MAST3O60307 1309 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 GPTP24298 496 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 GTF2F1P35269 517 aaKnown RBP eCLIP14.72□□□□□ -0.052e-10■■■■■ 37.3
LIG1-201ENST00000263274 STRN4Q9NRL3 753 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 IDH1O75874 414 aaKnown RBP14.72□□□□□ -0.05
LIG1-201ENST00000263274 IL15P40933 162 aaPredicted RBP14.72□□□□□ -0.05
LIG1-201ENST00000263274 IQCB1Q15051 598 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 NAA16Q6N069 864 aaPredicted RBP14.72□□□□□ -0.05
LIG1-201ENST00000263274 NFXL1Q6ZNB6 911 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 FAM89AQ96GI7 184 aa14.72□□□□□ -0.05
LIG1-201ENST00000263274 ZFP91Q96JP5 570 aaPredicted RBP14.72□□□□□ -0.05
LIG1-201ENST00000263274 EYA2O00167 538 aa14.71□□□□□ -0.05
LIG1-201ENST00000263274 SLC3A2P08195 630 aaKnown RBP14.71□□□□□ -0.05
LIG1-201ENST00000263274 NCBP1Q09161 790 aaKnown RBP14.71□□□□□ -0.05
LIG1-201ENST00000263274 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.71□□□□□ -0.05
LIG1-201ENST00000263274 HELLSQ9NRZ9 838 aa14.71□□□□□ -0.05
LIG1-201ENST00000263274 NRDCO43847 1150 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms