RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ACTA2P62736 377 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 ACTG2P63267 376 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 IL18R1Q13478 541 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 KCNJ8Q15842 424 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 BCL2L15Q5TBC7 163 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 TTC23Q5W5X9 447 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 PLEKHG7Q6ZR37 379 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 BCDIN3DQ7Z5W3 292 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 KCTD20Q7Z5Y7 419 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 COMMD2Q86X83 199 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 CCDC54Q8NEL0 328 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 OR51F2Q8NH61 342 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 HAVCR2Q8TDQ0 301 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 SGK3Q96BR1 496 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 PAPOLGQ9BWT3 736 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF665Q9H7R5 613 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 BRD7Q9NPI1 651 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 INPP5EQ9NRR6 644 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM118AQ9NWS6 357 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 CDC42EP3Q9UKI2 254 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 SNX5Q9Y5X3 404 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF469Q96JG9 3925 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 IRGMA1A4Y4 181 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 DHRS7CA6NNS2 312 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 CASQ2O14958 399 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 CST4P01036 141 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 IGHV2-70P01814 119 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 MAP2K3P46734 347 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 DVL1P1P54792 670 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 MVKQ03426 396 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 Q71RC1 249 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 GLCCI1Q86VQ1 547 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 KLHL36Q8N4N3 616 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 MSI2Q96DH6 328 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 SLC29A1Q99808 456 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 MICU1Q9BPX6 476 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 RTL8AQ9BWD3 113 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 PBOV1Q9GZY1 135 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 DCLRE1BQ9H816 532 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 RPL36Q9Y3U8 105 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 CACNG2Q9Y698 323 aa12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 NSD1Q96L73 2696 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-207ENST00000554051 ABCA1O95477 2261 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 CSPG4Q6UVK1 2322 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 TRAV20A0A0B4J274 112 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF816-ZNF321PA0A0X1KG74 233 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 A0A1W2PQL4 384 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 METTL15A6NJ78 407 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 TMEM210A6NLX4 147 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 INAFM1C9JVW0 142 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 TMEM178BH3BS89 294 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 LMX1BO60663 402 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 ENTPD6O75354 484 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 DHRS3O75911 302 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 FADS2O95864 444 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 IGHV2-5P01817 119 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 HLA-DPB1P04440 258 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 MSMBP08118 114 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 RPSAP08865 295 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 RAB40BQ12829 278 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 AVPI1Q5T686 147 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 LPCAT4Q643R3 524 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 KRT74Q7RTS7 529 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 MOGAT3Q86VF5 341 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 ENTHD1Q8IYW4 607 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 YIPF7Q8N8F6 280 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 RNFT2Q96EX2 444 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 SIGLEC11Q96RL6 698 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 MRM2Q9UI43 246 aaKnown RBP12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 PCDHB10Q9UN67 800 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 C2CD3Q4AC94 2353 aa12.13□□□□□ -0.47
CCDC88C-207ENST00000554051 H0YL77 283 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 PSMD9O00233 223 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 CRLF1O75462 422 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 FOXH1O75593 365 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 TGFAP01135 160 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 IGLV3-1P01715 115 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF12P17014 697 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 GABRB1P18505 474 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 GATA3P23771 443 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 PEX2P28328 305 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 HCCSP53701 268 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 PRSS12P56730 875 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 ZNF91Q05481 1191 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 MRPL28Q13084 256 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 MAB21L1Q13394 359 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 CHRFAM7AQ494W8 412 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 OGFRL1Q5TC84 451 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 NLRC3Q7RTR2 1065 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 THAP5Q7Z6K1 395 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 RFLNBQ8N5W9 214 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 ACBD7Q8N6N7 88 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 SEMA6DQ8NFY4 1073 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 RHOXF1Q8NHV9 184 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 NARFLQ9H6Q4 476 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 ENPP5Q9UJA9 477 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 OR52A1Q9UKL2 312 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 GTF2A1LQ9UNN4 478 aa12.12□□□□□ -0.47
CCDC88C-207ENST00000554051 HSPE1-MOB4S4R3N1 261 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms