RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PLEKHA1Q9HB21 404 aa14.9□□□□□ -0.02
CCDC28B-202ENST00000421922 CKLFQ9UBR5 152 aa14.9□□□□□ -0.02
CCDC28B-202ENST00000421922 TRBV5-5A0A0J9YX44 114 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 CBR1P16152 277 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF20P17024 532 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 ASCL1P50553 236 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 RPS11P62280 158 aaKnown RBP eCLIP14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 MXD1Q05195 221 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 DGUOKQ16854 277 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 C1QTNF12Q5T7M4 302 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 DOK3Q7L591 496 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 WDR31Q8NA23 367 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 TMEM106AQ96A25 262 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 FAM71F1Q96KD3 344 aaPredicted RBP14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 DERL3Q96Q80 235 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 TCF7L1Q9HCS4 588 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 NOX4Q9NPH5 578 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 GPR84Q9NQS5 396 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 EIF3KQ9UBQ5 218 aaKnown RBP14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF391Q9UJN7 358 aa14.89□□□□□ -0.03
CCDC28B-202ENST00000421922 ESPL1Q14674 2120 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 A0A0U1RQV5 110 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 A0A1W2PPK0 400 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 FAM90A27PA6NNH2 459 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 C16orf97H3BN30 126 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 XRCC2O43543 280 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 MTRF1O75570 445 aaKnown RBP14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 AGFG2O95081 481 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 IL1AP01583 271 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 RAF1P04049 648 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF182P17025 639 aaPredicted RBP14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 SDC2P34741 201 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 MTNR1BP49286 362 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 MALLQ13021 153 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 PPA1Q15181 289 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 KRTAP27-1Q3LI81 207 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 ALKBH2Q6NS38 261 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 NAA40Q86UY6 237 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 LIX1LQ8IVB5 337 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 CCDC54Q8NEL0 328 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 OR10AC1Q8NH08 325 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 AKAP1Q92667 903 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 APOBEC3DQ96AK3 386 aaPredicted RBP14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 MS4A3Q96HJ5 214 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 SNTG1Q9NSN8 517 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 JKAMPQ9P055 326 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 PCNX1Q96RV3 2341 aa14.88□□□□□ -0.03
CCDC28B-202ENST00000421922 LOC100509620A0A075B734 347 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 PDCD5O14737 125 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 SC5DO75845 299 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 UCHL1P09936 223 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 CCL2P13500 99 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 CFL1P23528 166 aaKnown RBP14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 FAM27E3Q08E93 113 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 RSPO1Q2MKA7 263 aaPredicted RBP14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 SNAI3Q3KNW1 292 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 FAM27D1Q5T7N8 215 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 UNQ9370/PRO34162Q6UXP9 181 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 SSX8Q7RTT4 187 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 PRSS45Q7RTY3 260 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF584Q8IVC4 421 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 OR51A4Q8NGJ6 313 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 REEP6Q96HR9 211 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 POM121L2Q96KW2 1035 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 C1QTNF6Q9BXI9 259 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 RGCCQ9H4X1 137 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 CCDC59Q9P031 241 aaKnown RBP14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 ERRFI1Q9UJM3 462 aaPredicted RBP14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 NBASA2RRP1 2371 aa14.87□□□□□ -0.03
CCDC28B-202ENST00000421922 J3QKU1 62 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF14P17017 642 aaPredicted RBP14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 GNLYP22749 145 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 GNALP38405 381 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 HGFACQ04756 655 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 UNQ6126/PRO20091Q6UXV3 157 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 TPRA1Q86W33 373 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 OR5L1Q8NGL2 311 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 DYNC2LI1Q8TCX1 351 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 CA5BP1Q8WTZ4 195 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 CCDC120Q96HB5 630 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 MED18Q9BUE0 208 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 C1QTNF5Q9BXJ0 243 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 TPK1Q9H3S4 243 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 SLC25A15Q9Y619 301 aa14.86□□□□□ -0.03
CCDC28B-202ENST00000421922 HECTD1Q9ULT8 2610 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 TRAV1-2A0A0B4J238 106 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 TRIM64BA6NI03 449 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 IGKV3-15P01624 115 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 CELA3BP08861 270 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 PCSK6P29122 969 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 MAGEB1P43366 347 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 RORCP51449 518 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 PPP3R1P63098 170 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 HNRNPA0Q13151 305 aaKnown RBP14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 C4orf17Q53FE4 359 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 FAM169BQ8N8A8 192 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 OR2AE1Q8NHA4 323 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 OR10A4Q9H209 315 aa14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 ZNF275Q9NSD4 429 aaPredicted RBP14.85□□□□□ -0.03
CCDC28B-202ENST00000421922 TRBV5-7A0A0A0MS05 114 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms