RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ALDH16A1Q8IZ83 802 aa21.8■■□□□ 1.08
SHMT1-207ENST00000580002 NDNFQ8TB73 568 aa21.8■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF281Q9Y2X9 895 aa21.8■■□□□ 1.08
SHMT1-207ENST00000580002 ARPC4-TTLL3A0A0A6YYG9 625 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 C5orf49A4QMS7 147 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 NKX2-6A6NCS4 301 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 LMX1BO60663 402 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF14P17017 642 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 IDH3GP51553 393 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 CCR9P51686 369 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 PRSS12P56730 875 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 MRPL28Q13084 256 aaKnown RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 SNTB1Q13884 538 aaKnown RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 BCL2L15Q5TBC7 163 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 SPTSSAQ969W0 71 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 POM121L2Q96KW2 1035 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 NIPAL2Q9H841 368 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 SLC24A3Q9HC58 644 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 SLC25A15Q9Y619 301 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 SHISA3A0PJX4 238 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ANKRD61A6NGH8 418 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 PYCARD-AS1I3L0S3 204 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 GFOD2Q3B7J2 385 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ACSM3Q53FZ2 586 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ELMOD2Q8IZ81 293 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ZNF420Q8TAQ5 688 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 RAB2BQ8WUD1 216 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 NANOS1Q8WY41 292 aaKnown RBP21.79■■□□□ 1.08
SHMT1-207ENST00000580002 OR14A2Q96R54 314 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ACTR6Q9GZN1 396 aa21.79■■□□□ 1.08
SHMT1-207ENST00000580002 ADGRG4Q8IZF6 3080 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 TRDV1A0A1B0GX56 115 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 SC5DO75845 299 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 SERPINA5P05154 406 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 CD1AP06126 327 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 SOX2P48431 317 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 ECH1Q13011 328 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 CEACAM19Q7Z692 300 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 OR51E1Q8TCB6 317 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 LYZL4Q96KX0 146 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 NUFIP1Q9UHK0 495 aaKnown RBP21.78■■□□□ 1.08
SHMT1-207ENST00000580002 SSR3Q9UNL2 185 aa21.78■■□□□ 1.08
SHMT1-207ENST00000580002 A0A1W2PPW3 197 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 ACOD1A6NK06 481 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 PIN1P1O15428 100 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 TBX1O43435 398 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 GRNP28799 593 aaKnown RBP21.77■■□□□ 1.08
SHMT1-207ENST00000580002 PCSK6P29122 969 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 UGT2B10P36537 528 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 TPTEP56180 551 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 TAB1Q15750 504 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 CNPY1Q3B7I2 92 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 PGAM5Q96HS1 289 aa21.77■■□□□ 1.08
SHMT1-207ENST00000580002 A0A1B0GTI1 187 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 TMEM212A6NML5 194 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 RGS9O75916 674 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-207ENST00000580002 LCATP04180 440 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 HLA-DPB1P04440 258 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 HOXB1P14653 301 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-207ENST00000580002 CHRNB4P30926 498 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 PLP2Q04941 152 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 OR2AE1Q8NHA4 323 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 OR51B6Q9H340 312 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 ERRFI1Q9UJM3 462 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF462Q96JM2 2506 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 IQCMA0A1B0GVH7 501 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 A6NIN4 97 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 GPRIN2O60269 458 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 NGFP01138 241 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 CBR1P16152 277 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 CD53P19397 219 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 HOXC12P31275 282 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 WNT5AP41221 380 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 DRAM2Q6UX65 266 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 DPPA2Q7Z7J5 298 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 CCDC36Q8IYA8 594 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 C17orf78Q8N4C9 275 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 SLC30A7Q8NEW0 376 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 HAVCR2Q8TDQ0 301 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 COMMD4Q9H0A8 199 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 ELOVL5Q9NYP7 299 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 NPAP1Q9NZP6 1156 aa21.76■■□□□ 1.07
SHMT1-207ENST00000580002 LOC107986453A0A1B0GWG9 222 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 SMIM30A4D0T7 59 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 CLEC2LP0C7M8 214 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 COX5BP10606 129 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 UNQ9370/PRO34162Q6UXP9 181 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 MS4A15Q8N5U1 240 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 SGK3Q96BR1 496 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 DCUN1D5Q9BTE7 237 aa21.75■■□□□ 1.07
SHMT1-207ENST00000580002 TRBV5-5A0A0J9YX44 114 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 C16orf97H3BN30 126 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 IGKV3-15P01624 115 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 ZMAT1Q5H9K5 638 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 TIMM23BQ5SRD1 257 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 ZNF101Q8IZC7 436 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 LILRB4Q8NHJ6 448 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 POFUT1Q9H488 388 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 GPR84Q9NQS5 396 aa21.74■■□□□ 1.07
SHMT1-207ENST00000580002 COQ3Q9NZJ6 369 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms