RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PINLYPA6NC86 204 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 OR14I1A6ND48 311 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 TVP23AA6NH52 213 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 CYSRT1A8MQ03 144 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 FAM171A2A8MVW0 826 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ZNF878C9JN71 531 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 LOC110117498-PIK3R3F6TDL0 507 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 H7C1C5 153 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MASP2O00187 686 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 DCTN6O00399 190 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 AQP7O14520 342 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 TFECO14948 347 aaPredicted RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 SLC19A2O60779 497 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MRPL33O75394 65 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 SC5DO75845 299 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 FARS2O95363 451 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 WISP1O95388 367 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ISG15P05161 165 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 UBCP0CG48 685 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 ZNF24P17028 368 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MSR1P21757 451 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 TCEA1P23193 301 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 CTSSP25774 331 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 SHC1P29353 583 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 SDC2P34741 201 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 RPS19P39019 145 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 MAGEA5P43359 124 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 CAPZA1P52907 286 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 CLDN20P56880 219 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 SCAND1P57086 179 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 LCN6P62502 163 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 RPS25P62851 125 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 MRPS34P82930 218 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 CAMK2DQ13557 499 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 TAF13Q15543 124 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MEP1BQ16820 701 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 Q499Y3 187 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 HSD17B12Q53GQ0 312 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ZMAT1Q5H9K5 638 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 DDI2Q5TDH0 399 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 METAP1DQ6UB28 335 aaPredicted RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 UNQ9370/PRO34162Q6UXP9 181 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MARCH9Q86YJ5 346 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 GHDCQ8N2G8 530 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ZNF676Q8N7Q3 588 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 RNF133Q8WVZ7 376 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ZNRF4Q8WWF5 429 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 C11orf40Q8WZ69 217 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 PGLYRP3Q96LB9 341 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 WDFY2Q96P53 400 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 TM9SF2Q99805 663 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ABHD6Q9BV23 337 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 HDHD5Q9BXW7 423 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ULBP2Q9BZM5 246 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 SEC61A2Q9H9S3 476 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 BCO1Q9HAY6 547 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ELOVL3Q9HB03 270 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 POLE4Q9NR33 117 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 SNTG1Q9NSN8 517 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 ACOXLQ9NUZ1 547 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MRPL22Q9NWU5 206 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 ABRACLQ9P1F3 81 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 CKLFQ9UBR5 152 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 MRM2Q9UI43 246 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 COPS3Q9UNS2 423 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 POLR1DQ9Y2S0 133 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 NOSIPQ9Y314 301 aaKnown RBP7.07□□□□□ -1.28
VPS39-213ENST00000570062 FLVCR1Q9Y5Y0 555 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 R4GMQ9 66 aa7.07□□□□□ -1.28
VPS39-213ENST00000570062 FRYQ5TBA9 3013 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 SDK2Q58EX2 2172 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 A0A0G2JMM0 328 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 A0A1W2PPB8 328 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 A0A1W2PPL8 197 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 A0A1W2PRS3 328 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 ISPDA4D126 451 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 ZNF716A6NP11 495 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 FAM166BA8MTA8 275 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 KIR3DP1A8MWS1 328 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 AHRRA9YTQ3 701 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 UPK3AO75631 287 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 KRT33AO76009 404 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 CNOT4O95628 575 aaKnown RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 ABHD16AO95870 558 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 LALBAP00709 142 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 OPN1LWP04000 364 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 YES1P07947 543 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 HOXD4P09016 255 aaPredicted RBP7.06□□□□□ -1.28
VPS39-213ENST00000570062 UCHL1P09936 223 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 OR8G3PP0DMU2 310 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 CD8BP10966 210 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 HSD11B1P28845 292 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 PTGER4P35408 488 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 ETV6P41212 452 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 BMXP51813 675 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 PPP5CP53041 499 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 HCCSP53701 268 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 CLDN18P56856 261 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 PPP3R1P63098 170 aa7.06□□□□□ -1.28
VPS39-213ENST00000570062 SCRN3Q0VDG4 424 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms