RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	RLP7	P40693	322 aa	Known RBP	4.78	□□□□□ -1.64
CUP9	YPL177C	SHR5	P41912	237 aa		4.78	□□□□□ -1.64
CUP9	YPL177C	DOS2	P54858	310 aa		4.78	□□□□□ -1.64
CUP9	YPL177C	ADR1	P07248	1323 aa		4.77	□□□□□ -1.65
CUP9	YPL177C	DIF1	O13577	133 aa		4.77	□□□□□ -1.65
CUP9	YPL177C	SET5	P38890	526 aa	Known RBP	4.77	□□□□□ -1.65
CUP9	YPL177C	FPR3	P38911	411 aa	Known RBP	4.77	□□□□□ -1.65
CUP9	YPL177C	CAF16	P43569	289 aa		4.77	□□□□□ -1.65
CUP9	YPL177C	ASI2	P53895	289 aa		4.77	□□□□□ -1.65
CUP9	YPL177C	CRR1	Q05790	422 aa		4.77	□□□□□ -1.65
CUP9	YPL177C	SFP1	P32432	683 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	TDP1	P38319	544 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	YJL163C	P46996	555 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	ZDS1	P50111	915 aa	Known RBP	4.76	□□□□□ -1.65
CUP9	YPL177C	YNL193W	P53870	558 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	YDR338C	Q05497	695 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	YLR001C	Q07895	862 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	THI21	Q08975	551 aa		4.76	□□□□□ -1.65
CUP9	YPL177C	VHR1	P40522	640 aa		4.75	□□□□□ -1.65
CUP9	YPL177C	TAH11	P47112	604 aa		4.75	□□□□□ -1.65
CUP9	YPL177C	SNP1	Q00916	300 aa	Predicted RBP	4.75	□□□□□ -1.65
CUP9	YPL177C	UTP14	Q04500	899 aa	Known RBP	4.75	□□□□□ -1.65
CUP9	YPL177C	YGR161W-C	Q3E744	92 aa		4.75	□□□□□ -1.65
CUP9	YPL177C	GFA1	P14742	717 aa	Known RBP	4.74	□□□□□ -1.65
CUP9	YPL177C	PCL2	P25693	308 aa		4.74	□□□□□ -1.65
CUP9	YPL177C	RPN10	P38886	268 aa	Known RBP	4.74	□□□□□ -1.65
CUP9	YPL177C	SSY5	P47002	699 aa		4.74	□□□□□ -1.65
CUP9	YPL177C	AIM14	P53109	570 aa		4.74	□□□□□ -1.65
CUP9	YPL177C	VPS73	P53142	486 aa	Known RBP	4.74	□□□□□ -1.65
CUP9	YPL177C	IMO32	P53219	342 aa		4.74	□□□□□ -1.65
CUP9	YPL177C	Q0142	Q9ZZW4	58 aa		4.74	□□□□□ -1.65
CUP9	YPL177C	SFL1	P20134	766 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	MIH1	P23748	554 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	HOG1	P32485	435 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	PPZ2	P33329	710 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	FLO10	P36170	1169 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	PCL5	P38794	229 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	RIX1	P38883	763 aa	Predicted RBP	4.73	□□□□□ -1.65
CUP9	YPL177C	SAK1	P38990	1142 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	ZIP2	P53061	704 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	MET13	P53128	600 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	ASM4	Q05166	528 aa		4.73	□□□□□ -1.65
CUP9	YPL177C	HLJ1	P48353	224 aa		4.72	□□□□□ -1.65
CUP9	YPL177C	AMA1	P50082	593 aa		4.72	□□□□□ -1.65
CUP9	YPL177C	UBC9	P50623	157 aa	Predicted RBP	4.72	□□□□□ -1.65
CUP9	YPL177C	SDA1	P53313	767 aa	Known RBP	4.72	□□□□□ -1.65
CUP9	YPL177C	RIA1	P53893	1110 aa		4.72	□□□□□ -1.65
CUP9	YPL177C	NHX1	Q04121	633 aa		4.72	□□□□□ -1.65
CUP9	YPL177C	ATG33	Q06485	197 aa		4.72	□□□□□ -1.65
CUP9	YPL177C	HMG1	P12683	1054 aa		4.71	□□□□□ -1.66
CUP9	YPL177C	PCM1	P38628	557 aa	Known RBP	4.71	□□□□□ -1.66
CUP9	YPL177C	CRP1	P38845	465 aa	Known RBP	4.71	□□□□□ -1.66
CUP9	YPL177C	NPY1	P53164	384 aa		4.71	□□□□□ -1.66
CUP9	YPL177C	YNR029C	P53729	429 aa	Known RBP	4.71	□□□□□ -1.66
CUP9	YPL177C	MUS81	Q04149	632 aa	Predicted RBP	4.71	□□□□□ -1.66
CUP9	YPL177C	COQ11	Q05892	277 aa		4.71	□□□□□ -1.66
CUP9	YPL177C	IRC13	Q08630	104 aa		4.71	□□□□□ -1.66
CUP9	YPL177C	YLR149C	Q99296	730 aa		4.71	□□□□□ -1.66
CUP9	YPL177C	TUB1	P09733	447 aa	Known RBP	4.7	□□□□□ -1.66
CUP9	YPL177C	YEL1	P34225	687 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	YKR051W	P36142	418 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	PZF1	P39933	429 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	PFA3	P42836	336 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	YFL052W	P43551	465 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	PKH1	Q03407	766 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	GIN4	Q12263	1142 aa		4.7	□□□□□ -1.66
CUP9	YPL177C	MDM10	P18409	493 aa		4.69	□□□□□ -1.66
CUP9	YPL177C	HCA4	P20448	770 aa	Known RBP	4.69	□□□□□ -1.66
CUP9	YPL177C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	not detected
CUP9	YPL177C	HSL7	P38274	827 aa		4.69	□□□□□ -1.66
CUP9	YPL177C	DOT6	P40059	670 aa	Known RBP	4.69	□□□□□ -1.66
CUP9	YPL177C	MGS1	P40151	587 aa		4.69	□□□□□ -1.66
CUP9	YPL177C	YIR042C	P40586	236 aa		4.69	□□□□□ -1.66
CUP9	YPL177C	MTR3	P48240	250 aa	Predicted RBP	4.69	□□□□□ -1.66
CUP9	YPL177C	GPR1	Q12361	961 aa		4.69	□□□□□ -1.66
CUP9	YPL177C	BNA2	P47125	453 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	NRG1	Q03125	231 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	RPN7	Q06103	429 aa	Known RBP	4.68	□□□□□ -1.66
CUP9	YPL177C	ARO10	Q06408	635 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	GUD1	Q07729	489 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	THI73	Q07904	523 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	YNL162W-A	Q3E7A8	72 aa		4.68	□□□□□ -1.66
CUP9	YPL177C	YLR415C	O13578	112 aa		4.67	□□□□□ -1.66
CUP9	YPL177C	LAT1	P12695	482 aa	Known RBP	4.67	□□□□□ -1.66
CUP9	YPL177C	CDC43	P18898	376 aa		4.67	□□□□□ -1.66
CUP9	YPL177C	KIN3	P22209	435 aa		4.67	□□□□□ -1.66
CUP9	YPL177C	ILV6	P25605	309 aa	Known RBP	4.67	□□□□□ -1.66
CUP9	YPL177C	COG8	Q04632	607 aa		4.67	□□□□□ -1.66
CUP9	YPL177C	SGO1	Q08490	590 aa		4.67	□□□□□ -1.66
CUP9	YPL177C	ADY2	P25613	283 aa		4.66	□□□□□ -1.66
CUP9	YPL177C	CCR4	P31384	837 aa	Known RBP	4.66	□□□□□ -1.66
CUP9	YPL177C	TYS1	P36421	394 aa	Known RBP	4.66	□□□□□ -1.66
CUP9	YPL177C	YIL166C	P40445	542 aa		4.66	□□□□□ -1.66
CUP9	YPL177C	HOS4	P40480	1083 aa		4.66	□□□□□ -1.66
CUP9	YPL177C	AFT2	Q08957	416 aa		4.66	□□□□□ -1.66
CUP9	YPL177C	TGL5	Q12043	749 aa		4.66	□□□□□ -1.66
CUP9	YPL177C	SIC1	P38634	284 aa		4.65	□□□□□ -1.67
CUP9	YPL177C	UBP12	P39538	1254 aa		4.65	□□□□□ -1.67
CUP9	YPL177C	FMP52	P40008	231 aa		4.65	□□□□□ -1.67
CUP9	YPL177C	YJR096W	P47137	282 aa		4.65	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 103.1 ms