RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	SNU71	P53207	620 aa	Known RBP	5.12	□□□□□ -1.59
SHE9	YDR393W	YDL124W	Q07551	312 aa	Known RBP	5.12	□□□□□ -1.59
SHE9	YDR393W	YAP7	Q08182	245 aa		5.12	□□□□□ -1.59
SHE9	YDR393W	YKL033W-A	Q86ZR7	236 aa		5.12	□□□□□ -1.59
SHE9	YDR393W	YEL020C	P39994	560 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	SHR5	P41912	237 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	ALG2	P43636	503 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	ATP25	Q03153	612 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	YDR514C	Q04408	483 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	MET7	Q08645	548 aa		5.11	□□□□□ -1.59
SHE9	YDR393W	TMT1	P32643	299 aa		5.1	□□□□□ -1.59
SHE9	YDR393W	BET3	P36149	193 aa		5.1	□□□□□ -1.59
SHE9	YDR393W	FMO1	P38866	432 aa		5.1	□□□□□ -1.59
SHE9	YDR393W	RLP7	P40693	322 aa	Known RBP	5.1	□□□□□ -1.59
SHE9	YDR393W	PAN2	P53010	1115 aa	Predicted RBP	5.1	□□□□□ -1.59
SHE9	YDR393W	MTL1	P53214	551 aa		5.1	□□□□□ -1.59
SHE9	YDR393W	PAM1	P37304	830 aa	Known RBP	5.09	□□□□□ -1.59
SHE9	YDR393W	LYS9	P38999	446 aa		5.09	□□□□□ -1.59
SHE9	YDR393W	BDH2	P39713	417 aa		5.09	□□□□□ -1.59
SHE9	YDR393W	YGR125W	P53273	1036 aa		5.09	□□□□□ -1.59
SHE9	YDR393W	MRI1	Q06489	411 aa	Known RBP	5.09	□□□□□ -1.59
SHE9	YDR393W	DIF1	O13577	133 aa		5.08	□□□□□ -1.6
SHE9	YDR393W	YHR020W	P38708	688 aa	Known RBP	5.08	□□□□□ -1.6
SHE9	YDR393W	SFB3	P38810	929 aa		5.08	□□□□□ -1.6
SHE9	YDR393W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	5.08	□□□□□ -1.6	not detected
SHE9	YDR393W	ARG2	P40360	574 aa		5.08	□□□□□ -1.6
SHE9	YDR393W	TY4A-J	P47023	414 aa		5.08	□□□□□ -1.6
SHE9	YDR393W	RPN13	O13563	156 aa		5.07	□□□□□ -1.6
SHE9	YDR393W	MVD1	P32377	396 aa	Known RBP	5.07	□□□□□ -1.6
SHE9	YDR393W	HUL4	P40985	892 aa		5.07	□□□□□ -1.6
SHE9	YDR393W	TIM54	P47045	478 aa		5.07	□□□□□ -1.6
SHE9	YDR393W	PRP31	P49704	494 aa	Predicted RBP	5.07	□□□□□ -1.6
SHE9	YDR393W	ZDS1	P50111	915 aa	Known RBP	5.07	□□□□□ -1.6
SHE9	YDR393W	FHN1	P53279	174 aa		5.07	□□□□□ -1.6
SHE9	YDR393W	YDR338C	Q05497	695 aa		5.07	□□□□□ -1.6
SHE9	YDR393W	SPC29	P33419	253 aa		5.06	□□□□□ -1.6
SHE9	YDR393W	GLG1	P36143	616 aa		5.06	□□□□□ -1.6
SHE9	YDR393W	YHR112C	P38716	378 aa		5.06	□□□□□ -1.6
SHE9	YDR393W	CTR1	P49573	406 aa		5.06	□□□□□ -1.6
SHE9	YDR393W	RGC1	Q06108	1083 aa	Known RBP	5.06	□□□□□ -1.6
SHE9	YDR393W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	5.05	□□□□□ -1.6	not detected
SHE9	YDR393W	ADE2	P21264	571 aa	Known RBP	5.05	□□□□□ -1.6
SHE9	YDR393W	PER1	P25625	357 aa		5.05	□□□□□ -1.6
SHE9	YDR393W	YBP2	P53169	641 aa		5.05	□□□□□ -1.6
SHE9	YDR393W	ORC2	P32833	620 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	NUP60	P39705	539 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	GLO1	P50107	326 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	RTA1	P53047	317 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	ATG4	P53867	494 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	CTK1	Q03957	528 aa	Known RBP	5.04	□□□□□ -1.6
SHE9	YDR393W	FLC1	Q08967	793 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	PHO11	P35842	467 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	APL2	P36000	726 aa	Predicted RBP	5.04	□□□□□ -1.6
SHE9	YDR393W	PHO12	P38693	467 aa		5.04	□□□□□ -1.6
SHE9	YDR393W	HRP1	Q99383	534 aa	Known RBP	5.04	□□□□□ -1.6
SHE9	YDR393W	PAC2	P39937	518 aa		5.03	□□□□□ -1.6
SHE9	YDR393W	ALY2	P47029	1046 aa		5.03	□□□□□ -1.6
SHE9	YDR393W	UBC9	P50623	157 aa	Predicted RBP	5.03	□□□□□ -1.6
SHE9	YDR393W	ARG5,6	Q01217	863 aa		5.03	□□□□□ -1.6
SHE9	YDR393W	MLH3	Q12083	715 aa		5.03	□□□□□ -1.6
SHE9	YDR393W	TRZ1	P36159	838 aa	Predicted RBP	5.02	□□□□□ -1.61
SHE9	YDR393W	HOM2	P13663	365 aa	Known RBP	5.01	□□□□□ -1.61
SHE9	YDR393W	VPS34	P22543	875 aa		5.01	□□□□□ -1.61
SHE9	YDR393W	ERG6	P25087	383 aa	Known RBP	5.01	□□□□□ -1.61
SHE9	YDR393W	SEC5	P89102	971 aa		5.01	□□□□□ -1.61
SHE9	YDR393W	RIM13	Q03792	727 aa		5.01	□□□□□ -1.61
SHE9	YDR393W	MCM21	Q06675	368 aa		5.01	□□□□□ -1.61
SHE9	YDR393W	OSW1	Q08692	278 aa		5.01	□□□□□ -1.61
SHE9	YDR393W	CAN1	P04817	590 aa		5	□□□□□ -1.61
SHE9	YDR393W	THR1	P17423	357 aa	Known RBP	5	□□□□□ -1.61
SHE9	YDR393W	MRK1	P50873	501 aa		5	□□□□□ -1.61
SHE9	YDR393W	YLR149C	Q99296	730 aa		5	□□□□□ -1.61
SHE9	YDR393W	MUP3	P38734	546 aa		4.99	□□□□□ -1.61
SHE9	YDR393W	USV1	Q12132	391 aa		4.99	□□□□□ -1.61
SHE9	YDR393W	CCR4	P31384	837 aa	Known RBP	4.98	□□□□□ -1.61
SHE9	YDR393W	RSP5	P39940	809 aa	Known RBP	4.98	□□□□□ -1.61
SHE9	YDR393W	GET2	P40056	285 aa		4.98	□□□□□ -1.61
SHE9	YDR393W	ORC4	P54791	529 aa		4.98	□□□□□ -1.61
SHE9	YDR393W	SEG1	Q04279	960 aa		4.98	□□□□□ -1.61
SHE9	YDR393W	SET3	P36124	751 aa		4.97	□□□□□ -1.61
SHE9	YDR393W	BNA2	P47125	453 aa		4.97	□□□□□ -1.61
SHE9	YDR393W	HUL5	P53119	910 aa		4.97	□□□□□ -1.61
SHE9	YDR393W	HMO1	Q03973	246 aa	Known RBP	4.97	□□□□□ -1.61
SHE9	YDR393W	ZRT2	Q12436	422 aa		4.97	□□□□□ -1.61
SHE9	YDR393W	FUB1	P25659	250 aa		4.96	□□□□□ -1.62
SHE9	YDR393W	APT2	P36973	181 aa		4.96	□□□□□ -1.62
SHE9	YDR393W	MIP6	P38760	659 aa	Known RBP	4.96	□□□□□ -1.62
SHE9	YDR393W	YJL049W	P47048	450 aa		4.95	□□□□□ -1.62
SHE9	YDR393W	Q0142	Q9ZZW4	58 aa		4.95	□□□□□ -1.62
SHE9	YDR393W	RNR1	P21524	888 aa	Known RBP	4.94	□□□□□ -1.62
SHE9	YDR393W	CRP1	P38845	465 aa	Known RBP	4.94	□□□□□ -1.62
SHE9	YDR393W	CLF1	Q12309	687 aa	Predicted RBP	4.94	□□□□□ -1.62
SHE9	YDR393W	GAL11	P19659	1081 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	MTC2	P34246	357 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	MCD4	P36051	919 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	GMH1	P36125	273 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	YFL052W	P43551	465 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	GAT1	P43574	510 aa		4.93	□□□□□ -1.62
SHE9	YDR393W	BNA3	P47039	444 aa	Known RBP	4.93	□□□□□ -1.62
SHE9	YDR393W	ERG11	P10614	530 aa		4.91	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms