RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W KAP114P53067 1004 aa15.04■□□□□ -0
DEP1YAL013W DIG1Q03063 452 aaKnown RBP15.04■□□□□ -0
DEP1YAL013W CEF1Q03654 590 aaPredicted RBP15.04■□□□□ -0
DEP1YAL013W YMR018WQ04364 514 aa15.04■□□□□ -0
DEP1YAL013W ADE4P04046 510 aaKnown RBP15.03■□□□□ -0
DEP1YAL013W CBF2P32504 956 aa15.03■□□□□ -0
DEP1YAL013W BUD2P33314 1104 aa15.03■□□□□ -0
DEP1YAL013W INP51P40559 946 aaKnown RBP15.03■□□□□ -0
DEP1YAL013W LAM5P43560 674 aa15.03■□□□□ -0
DEP1YAL013W DRN1P53255 507 aaKnown RBP15.03■□□□□ -0
DEP1YAL013W YDR222WQ04925 415 aa15.03■□□□□ -0
DEP1YAL013W LDH1P38139 375 aa15.02■□□□□ -0
DEP1YAL013W REI1P38344 393 aaPredicted RBP15.02■□□□□ -0
DEP1YAL013W SBE2P42223 864 aaKnown RBP15.02■□□□□ -0
DEP1YAL013W YMR1P47147 688 aaKnown RBP RIP-Chip data15.02■□□□□ -0not detected
DEP1YAL013W YDR524C-BQ3E6R4 66 aa15.02■□□□□ -0
DEP1YAL013W PAP1P29468 568 aaKnown RBP15.01□□□□□ -0.01
DEP1YAL013W RCK2P38623 610 aa15.01□□□□□ -0.01
DEP1YAL013W KAP123P40069 1113 aaKnown RBP15.01□□□□□ -0.01
DEP1YAL013W YGR130CP53278 816 aa15.01□□□□□ -0.01
DEP1YAL013W ALG11P53954 548 aaKnown RBP15.01□□□□□ -0.01
DEP1YAL013W SFI1Q12369 946 aa15.01□□□□□ -0.01
DEP1YAL013W EST1P17214 699 aaPredicted RBP15□□□□□ -0.01
DEP1YAL013W DRE2P36152 348 aa15□□□□□ -0.01
DEP1YAL013W PSY2P40164 858 aa15□□□□□ -0.01
DEP1YAL013W YNL134CP53912 376 aaKnown RBP15□□□□□ -0.01
DEP1YAL013W NOP14Q99207 810 aaKnown RBP15□□□□□ -0.01
DEP1YAL013W GAL10P04397 699 aa14.99□□□□□ -0.01
DEP1YAL013W GFA1P14742 717 aaKnown RBP14.99□□□□□ -0.01
DEP1YAL013W FUB1P25659 250 aa14.99□□□□□ -0.01
DEP1YAL013W YHL026CP38740 315 aa14.99□□□□□ -0.01
DEP1YAL013W GCV2P49095 1034 aa14.99□□□□□ -0.01
DEP1YAL013W YGR111WP53265 400 aa14.99□□□□□ -0.01
DEP1YAL013W SNU56Q03782 492 aaKnown RBP14.99□□□□□ -0.01
DEP1YAL013W ECM30Q06673 1274 aa14.99□□□□□ -0.01
DEP1YAL013W PUS1Q12211 544 aaKnown RBP14.99□□□□□ -0.01
DEP1YAL013W OSH2Q12451 1283 aa14.99□□□□□ -0.01
DEP1YAL013W LDB19Q12502 818 aa14.99□□□□□ -0.01
DEP1YAL013W CTF3Q12748 733 aa14.99□□□□□ -0.01
DEP1YAL013W POT1P27796 417 aaKnown RBP RIP-Chip data14.98□□□□□ -0.01not detected
DEP1YAL013W RRP1P35178 278 aaPredicted RBP14.98□□□□□ -0.01
DEP1YAL013W YMR114CQ04471 368 aaKnown RBP14.98□□□□□ -0.01
DEP1YAL013W ERV41Q04651 352 aa14.98□□□□□ -0.01
DEP1YAL013W CDD1Q06549 142 aa14.98□□□□□ -0.01
DEP1YAL013W VPS13Q07878 3144 aa14.97□□□□□ -0.01
DEP1YAL013W BI2P03873 423 aa14.97□□□□□ -0.01
DEP1YAL013W BI4P03879 638 aa14.97□□□□□ -0.01
DEP1YAL013W YER152CP10356 443 aa14.97□□□□□ -0.01
DEP1YAL013W SDH2P21801 266 aa14.97□□□□□ -0.01
DEP1YAL013W CYS3P31373 394 aaKnown RBP14.97□□□□□ -0.01
DEP1YAL013W BYE1P36106 594 aa14.97□□□□□ -0.01
DEP1YAL013W NCL1P38205 684 aaKnown RBP14.97□□□□□ -0.01
DEP1YAL013W SGM1P47166 707 aa14.97□□□□□ -0.01
DEP1YAL013W ALT1P52893 592 aa14.97□□□□□ -0.01
DEP1YAL013W YPR027CQ12079 277 aa14.97□□□□□ -0.01
DEP1YAL013W NOP58Q12499 511 aaKnown RBP14.97□□□□□ -0.01
DEP1YAL013W RMP1Q12530 201 aa14.97□□□□□ -0.01
DEP1YAL013W BI3Q9ZZW7 517 aa14.97□□□□□ -0.01
DEP1YAL013W CHS1P08004 1131 aa14.96□□□□□ -0.01
DEP1YAL013W RRN6P32786 894 aa14.96□□□□□ -0.01
DEP1YAL013W YMC2P38087 329 aa14.96□□□□□ -0.01
DEP1YAL013W ASG1P40467 964 aa14.96□□□□□ -0.01
DEP1YAL013W CWC22P53333 577 aaKnown RBP14.96□□□□□ -0.01
DEP1YAL013W JJJ1P53863 590 aa14.96□□□□□ -0.01
DEP1YAL013W CWC21Q03375 135 aaKnown RBP14.96□□□□□ -0.01
DEP1YAL013W YOR022CQ12204 715 aa14.96□□□□□ -0.01
DEP1YAL013W ADE3P07245 946 aaKnown RBP14.95□□□□□ -0.02
DEP1YAL013W HIS2P38635 335 aa14.95□□□□□ -0.02
DEP1YAL013W TDA3P38758 523 aa14.95□□□□□ -0.02
DEP1YAL013W YGR035CP53222 116 aa14.95□□□□□ -0.02
DEP1YAL013W YDR278CQ05612 105 aa14.95□□□□□ -0.02
DEP1YAL013W TIF1P10081 395 aaKnown RBP14.94□□□□□ -0.02
DEP1YAL013W RSA4P25382 515 aaKnown RBP14.94□□□□□ -0.02
DEP1YAL013W BIO2P32451 375 aa14.94□□□□□ -0.02
DEP1YAL013W GCG1P32656 232 aaKnown RBP14.94□□□□□ -0.02
DEP1YAL013W SPC72P39723 622 aa14.94□□□□□ -0.02
DEP1YAL013W LCP5P40079 357 aaPredicted RBP14.94□□□□□ -0.02
DEP1YAL013W YGL036WP53185 909 aaPredicted RBP14.94□□□□□ -0.02
DEP1YAL013W ATG16Q03818 150 aa14.94□□□□□ -0.02
DEP1YAL013W DNL4Q08387 944 aaPredicted RBP14.94□□□□□ -0.02
DEP1YAL013W YLR462WO13556 202 aa14.93□□□□□ -0.02
DEP1YAL013W MRP4P32902 394 aa14.93□□□□□ -0.02
DEP1YAL013W AGP2P38090 596 aa14.93□□□□□ -0.02
DEP1YAL013W POA1P38218 177 aa14.93□□□□□ -0.02
DEP1YAL013W RRT2P38332 387 aa14.93□□□□□ -0.02
DEP1YAL013W YHL049CP38722 271 aa14.93□□□□□ -0.02
DEP1YAL013W YEL075CP39972 122 aa14.93□□□□□ -0.02
DEP1YAL013W YER189WP40104 122 aa14.93□□□□□ -0.02
DEP1YAL013W MAD1P40957 749 aa14.93□□□□□ -0.02
DEP1YAL013W YFL064CP43540 174 aa14.93□□□□□ -0.02
DEP1YAL013W BRO1P48582 844 aa14.93□□□□□ -0.02
DEP1YAL013W NOP13P53883 403 aaKnown RBP RIP-Chip data14.93□□□□□ -0.02not detected
DEP1YAL013W FMP30Q02883 468 aa14.93□□□□□ -0.02
DEP1YAL013W YPL034WQ03083 165 aa14.93□□□□□ -0.02
DEP1YAL013W RRB1Q04225 511 aaKnown RBP14.93□□□□□ -0.02
DEP1YAL013W VTI1Q04338 217 aa14.93□□□□□ -0.02
DEP1YAL013W YLR455WQ06188 304 aa14.93□□□□□ -0.02
DEP1YAL013W SPO21Q12411 609 aa14.93□□□□□ -0.02
DEP1YAL013W YBL111CQ3E7Y5 667 aa14.93□□□□□ -0.02
DEP1YAL013W CNS1P33313 385 aa14.92□□□□□ -0.02
Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms