RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 LARP1BQ659C4 914 aaKnown RBP17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 LDHAL6AQ6ZMR3 332 aa17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 CHMP4CQ96CF2 233 aa17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 HEG1Q9ULI3 1381 aa17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 DNM1Q05193 864 aaKnown RBP17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 NOLC1Q14978 699 aaKnown RBP eCLIP17.15■□□□□ 0.34
SHROOM1-208ENST00000617339 MCM2P49736 904 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 CARD10Q9BWT7 1032 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 ANAPC15P60006 121 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 METTL24Q5JXM2 366 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 TTC39AQ5SRH9 613 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 STX6O43752 255 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 LRP10Q7Z4F1 713 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 FBXW7Q969H0 707 aa17.14■□□□□ 0.33
SHROOM1-208ENST00000617339 FOXO4P98177 505 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 BRF1Q92994 677 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 ATG3Q9NT62 314 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 TAF5LO75529 589 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 IDH1O75874 414 aaKnown RBP17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 IFIT5Q13325 482 aaKnown RBP17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 CAMK4Q16566 473 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 BBXQ8WY36 941 aaPredicted RBP17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 KIF3AQ9Y496 699 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 JAK2O60674 1132 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 RFX5P48382 616 aaPredicted RBP17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 RNF20Q5VTR2 975 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 COPRSQ9NQ92 184 aa17.13■□□□□ 0.33
SHROOM1-208ENST00000617339 SPC24Q8NBT2 197 aa17.12■□□□□ 0.33
SHROOM1-208ENST00000617339 MARF1Q9Y4F3 1742 aaKnown RBP17.12■□□□□ 0.33
SHROOM1-208ENST00000617339 PHF14O94880 888 aa17.12■□□□□ 0.33
SHROOM1-208ENST00000617339 U2AF2P26368 475 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHROOM1-208ENST00000617339 PAG1Q9NWQ8 432 aa17.12■□□□□ 0.33
SHROOM1-208ENST00000617339 ADCY5O95622 1261 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 MBD3O95983 291 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 GREM2Q9H772 168 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 NCOA5Q9HCD5 579 aaKnown RBP17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 GPHNQ9NQX3 736 aaPredicted RBP17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 ERVV-2B6SEH9 535 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 BRD1O95696 1058 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 ADAMTSL3P82987 1691 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 ATP6V1AP38606 617 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 SCARF1Q14162 830 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 NECTIN1Q15223 517 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 PDCL2Q8N4E4 241 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 BCL2L12Q9HB09 334 aa17.11■□□□□ 0.33
SHROOM1-208ENST00000617339 Q6ZUG5 572 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 WDR33Q9C0J8 1336 aaKnown RBP17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 EYA2O00167 538 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 KCNQ2O43526 872 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 MAPK8IP2Q13387 824 aaPredicted RBP17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 CAMTA1Q9Y6Y1 1673 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 AOX1Q06278 1338 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 ATG9AQ7Z3C6 839 aa17.1■□□□□ 0.33
SHROOM1-208ENST00000617339 TCIRG1Q13488 830 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 MAP4K1Q92918 833 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 NCAPD2Q15021 1401 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 GOLGA6L4A6NEF3 574 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 H7C1W4 665 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 SYAP1Q96A49 352 aaPredicted RBP17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 SLC4A9Q96Q91 983 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 ITGA6P23229 1130 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 APOBRQ0VD83 1088 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 CCDC158Q5M9N0 1113 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 ZNF771Q7L3S4 317 aaPredicted RBP17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 DZIP3Q86Y13 1208 aaKnown RBP17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 XAGE2Q96GT9 111 aa17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 SOS2Q07890 1332 aaPredicted RBP17.09■□□□□ 0.33
SHROOM1-208ENST00000617339 CYP21A2P08686 494 aa17.08■□□□□ 0.33
SHROOM1-208ENST00000617339 ZAP70P43403 619 aa17.08■□□□□ 0.33
SHROOM1-208ENST00000617339 NEK1Q96PY6 1258 aa17.08■□□□□ 0.33
SHROOM1-208ENST00000617339 H3BQV1 296 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 IRS4O14654 1257 aaPredicted RBP17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 ATP5JP18859 108 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 CUL4AQ13619 759 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 UTP14CQ5TAP6 766 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 IFFO2Q5TF58 517 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 TTC14Q96N46 770 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 ZSCAN22P10073 491 aaPredicted RBP17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 RXRAP19793 462 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 HMGN5P82970 282 aaKnown RBP17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 MCMDC2Q4G0Z9 681 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 GIMAP6Q6P9H5 292 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 CCDC191Q8NCU4 936 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 PIBF1Q8WXW3 757 aa17.08■□□□□ 0.32
SHROOM1-208ENST00000617339 FAM208AQ9UK61 1670 aaKnown RBP17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 PSMA5P28066 241 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 VPS37DQ86XT2 251 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 CCDC144CPQ8IYA2 1237 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 FAM184AQ8NB25 1140 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 CDC37L1Q7L3B6 337 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 HIP1O00291 1037 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 OTUD7BQ6GQQ9 843 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 CGNQ9P2M7 1197 aaKnown RBP17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 JAG2Q9Y219 1238 aa17.07■□□□□ 0.32
SHROOM1-208ENST00000617339 IL15P40933 162 aaPredicted RBP17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 PRIMPOLQ96LW4 560 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 SEC31BQ9NQW1 1179 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 SLC4A8Q2Y0W8 1093 aa17.06■□□□□ 0.32
SHROOM1-208ENST00000617339 MPHOSPH8Q99549 860 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms