RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 TM6SF1Q9BZW5 370 aa21.56■■□□□ 1.04
UPF1-210ENST00000600689 KDM3BQ7LBC6 1761 aa21.56■■□□□ 1.04
UPF1-210ENST00000600689 CCAR1Q8IX12 1150 aaKnown RBP21.56■■□□□ 1.04
UPF1-210ENST00000600689 SEC62Q99442 399 aaKnown RBP21.56■■□□□ 1.04
UPF1-210ENST00000600689 LMO7Q8WWI1 1683 aa21.55■■□□□ 1.04
UPF1-210ENST00000600689 RNF20Q5VTR2 975 aa21.55■■□□□ 1.04
UPF1-210ENST00000600689 FBXO38Q6PIJ6 1188 aa21.55■■□□□ 1.04
UPF1-210ENST00000600689 ERBB3P21860 1342 aa21.55■■□□□ 1.04
UPF1-210ENST00000600689 SLFNL1Q499Z3 407 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 ISM2Q6H9L7 571 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 AOPEPQ8N6M6 819 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 DNAJC2Q99543 621 aaKnown RBP21.54■■□□□ 1.04
UPF1-210ENST00000600689 Q6ZUG5 572 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 TMEM94Q12767 1356 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 GTF3C6Q969F1 213 aa21.54■■□□□ 1.04
UPF1-210ENST00000600689 BIN1O00499 593 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 SASH1O94885 1247 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 SLFN14P0C7P3 912 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 ATF3P18847 181 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 NLRP2Q9NX02 1062 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 ELP1O95163 1332 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 PTPN21Q16825 1174 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 CHST3Q7LGC8 479 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 LRRN4CLQ8ND94 238 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 ADCY9O60503 1353 aa21.53■■□□□ 1.04
UPF1-210ENST00000600689 GIGYF1O75420 1035 aaPredicted RBP21.52■■□□□ 1.04
UPF1-210ENST00000600689 GOLPH3LQ9H4A5 285 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 BICC1Q9H694 974 aaKnown RBP21.52■■□□□ 1.04
UPF1-210ENST00000600689 ME1P48163 572 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 SLC39A6Q13433 755 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 CHRNA2Q15822 529 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 KRT222Q8N1A0 295 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 SUCLG2Q96I99 432 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 PXDNLA1KZ92 1463 aa21.52■■□□□ 1.04
UPF1-210ENST00000600689 HSPA2P54652 639 aa21.52■■□□□ 1.03
UPF1-210ENST00000600689 NCOA5Q9HCD5 579 aaKnown RBP21.52■■□□□ 1.03
UPF1-210ENST00000600689 SMC2O95347 1197 aa21.51■■□□□ 1.03
UPF1-210ENST00000600689 ERCC6LQ2NKX8 1250 aa21.51■■□□□ 1.03
UPF1-210ENST00000600689 NCAPD2Q15021 1401 aa21.51■■□□□ 1.03
UPF1-210ENST00000600689 HOXB7P09629 217 aa21.5■■□□□ 1.03
UPF1-210ENST00000600689 IQCB1Q15051 598 aa21.5■■□□□ 1.03
UPF1-210ENST00000600689 CCDC73Q6ZRK6 1079 aa21.5■■□□□ 1.03
UPF1-210ENST00000600689 KINO60870 393 aaKnown RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 PIP4K2AP48426 406 aaPredicted RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 RESTQ13127 1097 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 ANKRD1Q15327 319 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 ZNF397Q8NF99 534 aaPredicted RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 SDF4Q9BRK5 362 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 DBF4Q9UBU7 674 aaPredicted RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 SYT10Q6XYQ8 523 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 RAB11FIP4Q86YS3 637 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 OTUD7BQ6GQQ9 843 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 FSIP1Q8NA03 581 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 NEK1Q96PY6 1258 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 TMX1Q9H3N1 280 aa21.49■■□□□ 1.03
UPF1-210ENST00000600689 N4BP2Q86UW6 1770 aaPredicted RBP21.49■■□□□ 1.03
UPF1-210ENST00000600689 MST1RQ04912 1400 aa21.48■■□□□ 1.03
UPF1-210ENST00000600689 TERF2Q15554 542 aa21.48■■□□□ 1.03
UPF1-210ENST00000600689 FAM177A1Q8N128 213 aaPredicted RBP21.48■■□□□ 1.03
UPF1-210ENST00000600689 USP28Q96RU2 1077 aa21.48■■□□□ 1.03
UPF1-210ENST00000600689 STRCP1A6NGW2 1772 aa21.48■■□□□ 1.03
UPF1-210ENST00000600689 TUBGCP6Q96RT7 1819 aa21.48■■□□□ 1.03
UPF1-210ENST00000600689 APOBRQ0VD83 1088 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 STX1AQ16623 288 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 A0A1B0GVL5 298 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 MYL6BP14649 208 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 RAPGEF4Q8WZA2 1011 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 MORC2Q9Y6X9 1032 aaPredicted RBP21.47■■□□□ 1.03
UPF1-210ENST00000600689 RBM6P78332 1123 aaKnown RBP21.47■■□□□ 1.03
UPF1-210ENST00000600689 CCZ1BP86790 482 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 CCZ1P86791 482 aaPredicted RBP21.47■■□□□ 1.03
UPF1-210ENST00000600689 SCRN1Q12765 414 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 DDX46Q7L014 1031 aaKnown RBP21.47■■□□□ 1.03
UPF1-210ENST00000600689 TMC6Q7Z403 805 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 HOMER1Q86YM7 354 aa21.47■■□□□ 1.03
UPF1-210ENST00000600689 ZRSR1Q15695 479 aaKnown RBP21.46■■□□□ 1.03
UPF1-210ENST00000600689 CCAR2Q8N163 923 aaKnown RBP21.46■■□□□ 1.03
UPF1-210ENST00000600689 CSB-PGBD3P0DP91 1061 aa21.46■■□□□ 1.03
UPF1-210ENST00000600689 NFATC2IPQ8NCF5 419 aa21.46■■□□□ 1.03
UPF1-210ENST00000600689 CFAP45Q9UL16 551 aa21.46■■□□□ 1.03
UPF1-210ENST00000600689 ALS2Q96Q42 1657 aa21.46■■□□□ 1.03
UPF1-210ENST00000600689 POLR3GO15318 223 aaPredicted RBP21.45■■□□□ 1.02
UPF1-210ENST00000600689 GABPB1Q06547 395 aaPredicted RBP21.45■■□□□ 1.02
UPF1-210ENST00000600689 ERC1Q8IUD2 1116 aa21.45■■□□□ 1.02
UPF1-210ENST00000600689 A0A0G2JLW4 131 aa21.45■■□□□ 1.02
UPF1-210ENST00000600689 TAF5LO75529 589 aa21.45■■□□□ 1.02
UPF1-210ENST00000600689 SLU7O95391 586 aaKnown RBP21.45■■□□□ 1.02
UPF1-210ENST00000600689 CDK11BP21127 795 aaKnown RBP21.45■■□□□ 1.02
UPF1-210ENST00000600689 SNW1Q13573 536 aaKnown RBP21.45■■□□□ 1.02
UPF1-210ENST00000600689 KIF1AQ12756 1690 aa21.45■■□□□ 1.02
UPF1-210ENST00000600689 RBM43Q6ZSC3 357 aaKnown RBP21.44■■□□□ 1.02
UPF1-210ENST00000600689 DHX40Q8IX18 779 aaKnown RBP21.44■■□□□ 1.02
UPF1-210ENST00000600689 KCNB2Q92953 911 aa21.44■■□□□ 1.02
UPF1-210ENST00000600689 POLR3DP05423 398 aaPredicted RBP21.44■■□□□ 1.02
UPF1-210ENST00000600689 GOLGA8FQ08AF8 430 aa21.44■■□□□ 1.02
UPF1-210ENST00000600689 GOLGA8DPQ0D2H9 430 aa21.44■■□□□ 1.02
UPF1-210ENST00000600689 IFNKQ9P0W0 207 aa21.44■■□□□ 1.02
UPF1-210ENST00000600689 HEG1Q9ULI3 1381 aa21.43■■□□□ 1.02
UPF1-210ENST00000600689 USP42Q9H9J4 1324 aaKnown RBP21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms