RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 BTG4Q9NY30 223 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 SLC27A5Q9Y2P5 690 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 KCPQ6ZWJ8 1503 aa10.83□□□□□ -0.68
VPS29-203ENST00000546588 NHSQ6T4R5 1651 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 CYP27B1O15528 508 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 VAMP4O75379 141 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 HSP90AB1P08238 724 aaKnown RBP10.82□□□□□ -0.68
VPS29-203ENST00000546588 DCTN1Q14203 1278 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 PDE3AQ14432 1141 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 ZNF530Q6P9A1 599 aaPredicted RBP10.82□□□□□ -0.68
VPS29-203ENST00000546588 LARP1Q6PKG0 1096 aaKnown RBP10.82□□□□□ -0.68
VPS29-203ENST00000546588 BRICD5Q6PL45 260 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 TREML4Q6UXN2 200 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 IFNL2Q8IZJ0 200 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 RETREG2Q8NC44 543 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 DCAF5Q96JK2 942 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 BCL9O00512 1426 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 SPATA31A1Q5TZJ5 1347 aa10.82□□□□□ -0.68
VPS29-203ENST00000546588 PXDNLA1KZ92 1463 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 COL5A3P25940 1745 aaPredicted RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 TJP1Q07157 1748 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 NUP188Q5SRE5 1749 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 RNMTO43148 476 aaKnown RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 HOXA2O43364 376 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 CD2BP2O95400 341 aaKnown RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 FMNL1O95466 1100 aaPredicted RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 PIP4K2BP78356 416 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 GUCA2AQ02747 115 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 PDE4CQ08493 712 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 TAF7Q15545 349 aaPredicted RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 PRPF38BQ5VTL8 546 aaKnown RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 TOM1L2Q6ZVM7 507 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 TRAIPQ9BWF2 469 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 DACH1Q9UI36 760 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 CCDC9Q9Y3X0 531 aaKnown RBP10.81□□□□□ -0.68
VPS29-203ENST00000546588 RGS12O14924 1447 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 SPATA31A5Q5VU36 1347 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 SPATA31A7Q8IWB4 1347 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 KIF16BQ96L93 1317 aa10.81□□□□□ -0.68
VPS29-203ENST00000546588 CSB-PGBD3P0DP91 1061 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 SMCPP49901 116 aaPredicted RBP10.8□□□□□ -0.68
VPS29-203ENST00000546588 USP46P62068 366 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 AAMPQ13685 434 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 C1orf141Q5JVX7 400 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.8□□□□□ -0.68
VPS29-203ENST00000546588 ARHGAP45Q92619 1136 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 NDUFB9Q9Y6M9 179 aa10.8□□□□□ -0.68
VPS29-203ENST00000546588 IBTKQ9P2D0 1353 aaPredicted RBP10.79□□□□□ -0.68
VPS29-203ENST00000546588 LY75O60449 1722 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 ATRNO75882 1429 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 TWISTNBQ3B726 338 aaPredicted RBP10.79□□□□□ -0.68
VPS29-203ENST00000546588 MSS51Q4VC12 460 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 HLA-CQ95604 372 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 PKNOX2Q96KN3 472 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 PRDM9Q9NQV7 894 aa10.79□□□□□ -0.68
VPS29-203ENST00000546588 ARFGEF2Q9Y6D5 1785 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 BCAR3O75815 825 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 TSPYL6Q8N831 410 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 ZCRB1Q8TBF4 217 aaKnown RBP10.78□□□□□ -0.68
VPS29-203ENST00000546588 SSH1Q8WYL5 1049 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 SLC52A2Q9HAB3 445 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 LGR6Q9HBX8 967 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 BRWD3Q6RI45 1802 aa10.78□□□□□ -0.68
VPS29-203ENST00000546588 ERVV-2B6SEH9 535 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 SOCS7O14512 581 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 CTDSPL2Q05D32 466 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 VPS72Q15906 364 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 CTC1Q2NKJ3 1217 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 UNC5CLQ8IV45 518 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 KCTD17Q8N5Z5 321 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 C8orf58Q8NAV2 365 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 TSPYL4Q9UJ04 414 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 ABCC4O15439 1325 aa10.77□□□□□ -0.69
VPS29-203ENST00000546588 ANKRD36CQ5JPF3 1778 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 HSPA1LP34931 641 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 EVA1CP58658 441 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 EIF4A1P60842 406 aaKnown RBP10.76□□□□□ -0.69
VPS29-203ENST00000546588 TAF7LQ5H9L4 462 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 HELBQ8NG08 1087 aaPredicted RBP10.76□□□□□ -0.69
VPS29-203ENST00000546588 CHMP4AQ9BY43 222 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 PCDHGC3Q9UN70 934 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 BTAF1O14981 1849 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
VPS29-203ENST00000546588 RGPD3A6NKT7 1758 aaPredicted RBP10.75□□□□□ -0.69
VPS29-203ENST00000546588 RGPD4Q7Z3J3 1758 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 TEFQ10587 303 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 HDGFL1Q5TGJ6 251 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 MPRIPQ6WCQ1 1025 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 RNF19BQ6ZMZ0 732 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 CYP4X1Q8N118 509 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 GJD4Q96KN9 370 aaPredicted RBP10.75□□□□□ -0.69
VPS29-203ENST00000546588 HMX1Q9NP08 348 aaPredicted RBP10.75□□□□□ -0.69
VPS29-203ENST00000546588 STRN4Q9NRL3 753 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 PPP4R2Q9NY27 417 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 PTPRCP08575 1304 aa10.75□□□□□ -0.69
VPS29-203ENST00000546588 C6orf229H3BNL8 230 aa10.74□□□□□ -0.69
VPS29-203ENST00000546588 RFX1P22670 979 aa10.74□□□□□ -0.69
VPS29-203ENST00000546588 MTMR2Q13614 643 aa10.74□□□□□ -0.69
VPS29-203ENST00000546588 ZKSCAN2Q63HK3 967 aa10.74□□□□□ -0.69
VPS29-203ENST00000546588 GMPR2Q9P2T1 348 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms