RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NBPF26B4DH59 902 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 ATP5JP18859 108 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 PDCP20941 246 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 MCMDC2Q4G0Z9 681 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 NBPF14Q5TI25 921 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 NBPF10Q6P3W6 841 aaKnown RBP17.76■□□□□ 0.43
USP28-214ENST00000545540 NBPF15Q8N660 670 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 ZNF165P49910 485 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 IFNL2Q8IZJ0 200 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 NAA30Q147X3 362 aaPredicted RBP17.76■□□□□ 0.43
USP28-214ENST00000545540 ZNF710Q8N1W2 664 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 SYNE4Q8N205 404 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 UTYO14607 1347 aa17.76■□□□□ 0.43
USP28-214ENST00000545540 ANKRD1Q15327 319 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 COPRSQ9NQ92 184 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 LRP10Q7Z4F1 713 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 ZNF592Q92610 1267 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 SPDYE4A6NLX3 237 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 DYNC1I1O14576 645 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 POLR3DP05423 398 aaPredicted RBP17.75■□□□□ 0.43
USP28-214ENST00000545540 KIAA1524Q8TCG1 905 aa17.75■□□□□ 0.43
USP28-214ENST00000545540 ISM2Q6H9L7 571 aa17.74■□□□□ 0.43
USP28-214ENST00000545540 FMNL2Q96PY5 1086 aa17.74■□□□□ 0.43
USP28-214ENST00000545540 SCAND2PQ9GZW5 306 aaPredicted RBP17.74■□□□□ 0.43
USP28-214ENST00000545540 CTDNEP1O95476 244 aa17.74■□□□□ 0.43
USP28-214ENST00000545540 C11orf57Q6ZUT1 292 aaPredicted RBP17.74■□□□□ 0.43
USP28-214ENST00000545540 MYRIPQ8NFW9 859 aa17.74■□□□□ 0.43
USP28-214ENST00000545540 SYTL4Q96C24 671 aaPredicted RBP17.74■□□□□ 0.43
USP28-214ENST00000545540 MED1Q15648 1581 aaPredicted RBP17.73■□□□□ 0.43
USP28-214ENST00000545540 RIOK3O14730 519 aaKnown RBP17.73■□□□□ 0.43
USP28-214ENST00000545540 CBX1P83916 185 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 USP28Q96RU2 1077 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 PAG1Q9NWQ8 432 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 KDM3BQ7LBC6 1761 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 PTPDC1A2A3K4 754 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 RESTQ13127 1097 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 WASHC4Q2M389 1173 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 CCDC144BQ3MJ40 725 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 CCDC144CPQ8IYA2 1237 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 GOLPH3LQ9H4A5 285 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 DENND2AQ9ULE3 1009 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 ADORA1P30542 326 aa17.73■□□□□ 0.43
USP28-214ENST00000545540 FILIP1Q7Z7B0 1213 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 ADGRL3Q9HAR2 1447 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 MEGF6O75095 1541 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 CCAR1Q8IX12 1150 aaKnown RBP17.72■□□□□ 0.43
USP28-214ENST00000545540 HAUS7Q99871 368 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 FER1L4A9Z1Z3 1794 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 RXRAP19793 462 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 ME1P48163 572 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 ATG9AQ7Z3C6 839 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 STK11IPQ8N1F8 1099 aa17.72■□□□□ 0.43
USP28-214ENST00000545540 IFIT1P09914 478 aaKnown RBP17.71■□□□□ 0.43
USP28-214ENST00000545540 GORABQ5T7V8 394 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 KAT6BQ8WYB5 2073 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 BIN1O00499 593 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 IGSF3O75054 1194 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 TERF1P54274 439 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 FOXO4P98177 505 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 KBTBD3Q8NAB2 608 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 NSUN7Q8NE18 718 aaKnown RBP17.71■□□□□ 0.43
USP28-214ENST00000545540 CLSTN2Q9H4D0 955 aa17.71■□□□□ 0.43
USP28-214ENST00000545540 M0R2C6 588 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 HSPD1P10809 573 aaKnown RBP17.7■□□□□ 0.42
USP28-214ENST00000545540 HMG20BQ9P0W2 317 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 A0A1B0GUL7 405 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 A0A1B0GVL5 298 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 SCARF1Q14162 830 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 PTPN21Q16825 1174 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 FAM89AQ96GI7 184 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 BCL2L12Q9HB09 334 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 STRN4Q9NRL3 753 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 U3KPZ7 1027 aaPredicted RBP17.7■□□□□ 0.42
USP28-214ENST00000545540 E7EWF7 191 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 USPL1Q5W0Q7 1092 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 TRMT1Q9NXH9 659 aaKnown RBP17.7■□□□□ 0.42
USP28-214ENST00000545540 CLIP2Q9UDT6 1046 aa17.7■□□□□ 0.42
USP28-214ENST00000545540 RGPD5Q99666 1765 aa17.69■□□□□ 0.42
USP28-214ENST00000545540 ATF3P18847 181 aa17.69■□□□□ 0.42
USP28-214ENST00000545540 CACTINQ8WUQ7 758 aaKnown RBP17.69■□□□□ 0.42
USP28-214ENST00000545540 OSBP2Q969R2 916 aa17.69■□□□□ 0.42
USP28-214ENST00000545540 KIF3AQ9Y496 699 aa17.69■□□□□ 0.42
USP28-214ENST00000545540 DHX32Q7L7V1 743 aaKnown RBP17.69■□□□□ 0.42
USP28-214ENST00000545540 NKX2-3Q8TAU0 364 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 DCAF5Q96JK2 942 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.68■□□□□ 0.42
USP28-214ENST00000545540 V9GYY5 206 aaPredicted RBP17.68■□□□□ 0.42
USP28-214ENST00000545540 GPTP24298 496 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 ZNF75DP51815 510 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 CASP7P55210 303 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 KRT32Q14532 448 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 TOM1L2Q6ZVM7 507 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 USP27XA6NNY8 438 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 PPP4R3BQ5MIZ7 849 aa17.68■□□□□ 0.42
USP28-214ENST00000545540 MAST3O60307 1309 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 A0A0G2JS52 829 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 ADD1P35611 737 aaKnown RBP17.67■□□□□ 0.42
USP28-214ENST00000545540 PLBD2Q8NHP8 589 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 NPHP1O15259 732 aa17.67■□□□□ 0.42
USP28-214ENST00000545540 RABL6Q3YEC7 729 aaPredicted RBP17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms