RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 VGLL3A8MV65 326 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 GNAI3P08754 354 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 ZSCAN20P17040 1043 aaPredicted RBP17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 ATP2B3Q16720 1220 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 NLRP10Q86W26 655 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 SRGAP3O43295 1099 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 SASS6Q6UVJ0 657 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 ARFGEF2Q9Y6D5 1785 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 DYNC1I1O14576 645 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 ZNF500O60304 480 aaPredicted RBP17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 ZPR1O75312 459 aa17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 SF3B2Q13435 895 aaKnown RBP17.15■□□□□ 0.34
SFSWAP-210ENST00000541286 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.14■□□□□ 0.33
SFSWAP-210ENST00000541286 CACNA1FO60840 1977 aa17.14■□□□□ 0.33
SFSWAP-210ENST00000541286 CHMLP26374 656 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 LMBR1LQ6UX01 489 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 CWC25Q9NXE8 425 aaPredicted RBP17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 TAF1LQ8IZX4 1826 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 WTIPA6NIX2 430 aaPredicted RBP17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 CCDC94Q9BW85 323 aaPredicted RBP17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 C4BP0C0L5 1744 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 LY75O60449 1722 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 SNAP23O00161 211 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 PLSCR1O15162 318 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 IL25Q9H293 177 aa17.13■□□□□ 0.33
SFSWAP-210ENST00000541286 CPA1P15085 419 aa17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 COL5A3P25940 1745 aaPredicted RBP17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 CNTNAP4Q9C0A0 1308 aa17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 ZNF445P59923 1031 aa17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 ERFEQ4G0M1 354 aa17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 ISCA1Q9BUE6 129 aa17.12■□□□□ 0.33
SFSWAP-210ENST00000541286 NPHP1O15259 732 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 CYP2E1P05181 493 aaPredicted RBP17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 ATP8B2P98198 1209 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 CWC27Q6UX04 472 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 ZNF710Q8N1W2 664 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 NUP98P52948 1817 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 AFDNP55196 1824 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 NFIXQ14938 502 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 GYS1P13807 737 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 SEC31BQ9NQW1 1179 aa17.11■□□□□ 0.33
SFSWAP-210ENST00000541286 CASP7P55210 303 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 DMTNQ08495 405 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 TAF1P21675 1872 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 TNS1Q9HBL0 1735 aaKnown RBP17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 PNPLA7Q6ZV29 1317 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 ZBTB7AO95365 584 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 UPF1Q92900 1129 aaKnown RBP eCLIP17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 AKT1S1Q96B36 256 aa17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 PUS3Q9BZE2 481 aaKnown RBP17.1■□□□□ 0.33
SFSWAP-210ENST00000541286 GTF2E1P29083 439 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 R3HDM1Q15032 1099 aaKnown RBP17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 GADD45BO75293 160 aaPredicted RBP17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 CSPP1Q1MSJ5 1256 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 ZNF34Q8IZ26 560 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 PDLIM2Q96JY6 352 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 CCDC39Q9UFE4 941 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 USP25Q9UHP3 1055 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 NARFQ9UHQ1 456 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 USP42Q9H9J4 1324 aaKnown RBP17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 BAG6P46379 1132 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 SLC27A3Q5K4L6 730 aa17.09■□□□□ 0.33
SFSWAP-210ENST00000541286 IRS4O14654 1257 aaPredicted RBP17.08■□□□□ 0.33
SFSWAP-210ENST00000541286 KIAA2012Q0VF49 1180 aa17.08■□□□□ 0.33
SFSWAP-210ENST00000541286 GREM2Q9H772 168 aa17.08■□□□□ 0.33
SFSWAP-210ENST00000541286 FOXO4P98177 505 aa17.08■□□□□ 0.32
SFSWAP-210ENST00000541286 DDR1Q08345 913 aa17.08■□□□□ 0.32
SFSWAP-210ENST00000541286 CLEC17AQ6ZS10 378 aa17.08■□□□□ 0.32
SFSWAP-210ENST00000541286 NUP188Q5SRE5 1749 aa17.08■□□□□ 0.32
SFSWAP-210ENST00000541286 U2AF2P26368 475 aaKnown RBP eCLIP17.08■□□□□ 0.325e-9■■■■■ 35.4
SFSWAP-210ENST00000541286 ATF5Q9Y2D1 282 aaPredicted RBP17.08■□□□□ 0.32
SFSWAP-210ENST00000541286 ABCC12Q96J65 1359 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 COL4A1P02462 1669 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 H7C1W4 665 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 ALDH1L1O75891 902 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 HELBQ8NG08 1087 aaPredicted RBP17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 SLC15A2Q16348 729 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 RC3H1Q5TC82 1133 aaKnown RBP17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 LRSAM1Q6UWE0 723 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 CARMIL3Q8ND23 1372 aa17.07■□□□□ 0.32
SFSWAP-210ENST00000541286 FIBPO43427 364 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 LRRC24Q50LG9 513 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 NBPF5PQ86XG9 351 aaPredicted RBP17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 PLCD3Q8N3E9 789 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 CCDC191Q8NCU4 936 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 SETDB2Q96T68 719 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 OSBPL3Q9H4L5 887 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 KCNJ4P48050 445 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 TERF1P54274 439 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 PDE4CQ08493 712 aa17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 CGNQ9P2M7 1197 aaKnown RBP17.06■□□□□ 0.32
SFSWAP-210ENST00000541286 NTSR2O95665 410 aa17.05■□□□□ 0.32
SFSWAP-210ENST00000541286 RHPN1Q8TCX5 695 aa17.05■□□□□ 0.32
SFSWAP-210ENST00000541286 NDUFB9Q9Y6M9 179 aa17.05■□□□□ 0.32
SFSWAP-210ENST00000541286 OLFM4Q6UX06 510 aa17.05■□□□□ 0.32
SFSWAP-210ENST00000541286 CHMP4AQ9BY43 222 aa17.05■□□□□ 0.32
SFSWAP-210ENST00000541286 UBR3Q6ZT12 1888 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 USP48Q86UV5 1035 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 KLHL34Q8N239 644 aa17.04■□□□□ 0.32
SFSWAP-210ENST00000541286 SPC24Q8NBT2 197 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms