RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 FHOD1Q9Y613 1164 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 WASLO00401 505 aaPredicted RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 KIF4AO95239 1232 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 CAPN2P17655 700 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 HNRNPH2P55795 449 aaKnown RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 NECTIN1Q15223 517 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ADCK5Q3MIX3 580 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 MUM1L1Q5H9M0 696 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 NECAB1Q8N987 351 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 CCDC150Q8NCX0 1101 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 USP44Q9H0E7 712 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ZSCAN16Q9H4T2 348 aaPredicted RBP10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ANO10Q9NW15 660 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 ZRANB1Q9UGI0 708 aa10.54□□□□□ -0.72
SNHG1-209ENST00000538654 CPS1P31327 1500 aa10.53□□□□□ -0.72
SNHG1-209ENST00000538654 ERBB3P21860 1342 aa10.53□□□□□ -0.72
SNHG1-209ENST00000538654 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 PNMA6AP0CW24 399 aaPredicted RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 TMCO3Q6UWJ1 677 aa10.53□□□□□ -0.72
SNHG1-209ENST00000538654 SRRTQ9BXP5 876 aaKnown RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 OSBPL5Q9H0X9 879 aaPredicted RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 TFIP11Q9UBB9 837 aaKnown RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 PPP1R42Q7Z4L9 355 aa10.53□□□□□ -0.72
SNHG1-209ENST00000538654 TRMT1Q9NXH9 659 aaKnown RBP10.53□□□□□ -0.72
SNHG1-209ENST00000538654 RIMBP3CA6NJZ7 1639 aa10.52□□□□□ -0.72
SNHG1-209ENST00000538654 RIMBP3BA6NNM3 1639 aa10.52□□□□□ -0.72
SNHG1-209ENST00000538654 RIMBP3Q9UFD9 1639 aa10.52□□□□□ -0.72
SNHG1-209ENST00000538654 CLCN6P51797 869 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 PTH1RQ03431 593 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 CCDC93Q567U6 631 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 CEP57L1Q8IYX8 460 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.52□□□□□ -0.73
SNHG1-209ENST00000538654 ERCC6LQ2NKX8 1250 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 CREB3L3Q68CJ9 461 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 FAM173BQ6P4H8 233 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 BLOC1S2Q6QNY1 142 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 PGBD1Q96JS3 809 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 EFCC1Q9HA90 598 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 MIS18AQ9NYP9 233 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 FEZ2Q9UHY8 353 aaPredicted RBP10.52□□□□□ -0.73
SNHG1-209ENST00000538654 CCDC61Q9Y6R9 512 aa10.52□□□□□ -0.73
SNHG1-209ENST00000538654 ARID5BQ14865 1188 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 LARP1Q6PKG0 1096 aaKnown RBP10.51□□□□□ -0.73
SNHG1-209ENST00000538654 UBXN4Q92575 508 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 GTF3C6Q969F1 213 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 ST7Q9NRC1 585 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 CWC15Q9P013 229 aaKnown RBP10.51□□□□□ -0.73
SNHG1-209ENST00000538654 RBM8AQ9Y5S9 174 aaKnown RBP10.51□□□□□ -0.73
SNHG1-209ENST00000538654 USP16Q9Y5T5 823 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 SRGAP3O43295 1099 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 ZRANB2O95218 330 aaKnown RBP eCLIP10.51□□□□□ -0.732e-9■■■■■ 30
SNHG1-209ENST00000538654 RAD51AP2Q09MP3 1159 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 ARHGAP29Q52LW3 1261 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 CCDC73Q6ZRK6 1079 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 PLCD3Q8N3E9 789 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 TRIM34Q9BYJ4 488 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 ECHDC1Q9NTX5 307 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 BABAM1Q9NWV8 329 aa10.51□□□□□ -0.73
SNHG1-209ENST00000538654 PHLPP2Q6ZVD8 1323 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 PLA2G4AP47712 749 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 ATL3Q6DD88 541 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 C11orf57Q6ZUT1 292 aaPredicted RBP10.5□□□□□ -0.73
SNHG1-209ENST00000538654 WAPLQ7Z5K2 1190 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 TXNDC2Q86VQ3 553 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 CLASRPQ8N2M8 674 aaKnown RBP10.5□□□□□ -0.73
SNHG1-209ENST00000538654 SREK1Q8WXA9 508 aaKnown RBP10.5□□□□□ -0.73
SNHG1-209ENST00000538654 MAP4K1Q92918 833 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 NUDT16Q96DE0 195 aaKnown RBP10.5□□□□□ -0.73
SNHG1-209ENST00000538654 LRRC37A3O60309 1634 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 KINO60870 393 aaKnown RBP10.5□□□□□ -0.73
SNHG1-209ENST00000538654 PPP1R13BQ96KQ4 1090 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 HMG20BQ9P0W2 317 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 MYH15Q9Y2K3 1946 aa10.5□□□□□ -0.73
SNHG1-209ENST00000538654 H3BQV1 296 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 RPS6KB1P23443 525 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 TNNT3P45378 269 aaPredicted RBP10.49□□□□□ -0.73
SNHG1-209ENST00000538654 RESTQ13127 1097 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 IFFO2Q5TF58 517 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 CTR9Q6PD62 1173 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 SND1Q7KZF4 910 aaKnown RBP eCLIP10.49□□□□□ -0.73
SNHG1-209ENST00000538654 ERC1Q8IUD2 1116 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 DHX40Q8IX18 779 aaKnown RBP10.49□□□□□ -0.73
SNHG1-209ENST00000538654 RASSF4Q9H2L5 321 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 SNRKQ9NRH2 765 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 DIP2CQ9Y2E4 1556 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 SLC27A2O14975 620 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 NPHP1O15259 732 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 SFPQP23246 707 aaKnown RBP eCLIP10.49□□□□□ -0.73
SNHG1-209ENST00000538654 SYT10Q6XYQ8 523 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 MNS1Q8NEH6 495 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 PMM1Q92871 262 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 ORC3Q9UBD5 711 aaPredicted RBP10.49□□□□□ -0.73
SNHG1-209ENST00000538654 STAG3Q9UJ98 1225 aa10.49□□□□□ -0.73
SNHG1-209ENST00000538654 TCF3P15923 654 aa10.48□□□□□ -0.73
SNHG1-209ENST00000538654 KRT32Q14532 448 aa10.48□□□□□ -0.73
SNHG1-209ENST00000538654 MTHFSDQ2M296 383 aaKnown RBP10.48□□□□□ -0.73
SNHG1-209ENST00000538654 CCDC158Q5M9N0 1113 aa10.48□□□□□ -0.73
SNHG1-209ENST00000538654 E4F1Q66K89 784 aaPredicted RBP10.48□□□□□ -0.73
SNHG1-209ENST00000538654 NALCNQ8IZF0 1738 aa10.48□□□□□ -0.73
SNHG1-209ENST00000538654 EFCAB8A8MWE9 144 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms