RNA–Protein interactions for RNA: ENST00000529045.1

PTPN22-208, Transcript of protein tyrosine phosphatase, non-receptor type 22, human

TSL 4

Gene PTPN22, Length 527 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN22-208	ENST00000529045	GTF2I	P78347	998 aa		9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	CC2D1B	Q5T0F9	858 aa	Known RBP	9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	FOXD4L5	Q5VV16	416 aa	Predicted RBP	9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	TRIM50	Q86XT4	487 aa		9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	LARGE2	Q8N3Y3	721 aa		9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	CHMP5	Q9NZZ3	219 aa		9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	PCDHGA11	Q9Y5H2	935 aa		9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	SOS2	Q07890	1332 aa	Predicted RBP	9.25	□□□□□ -0.93
PTPN22-208	ENST00000529045	ADGRB2	O60241	1585 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	NRXN3	Q9Y4C0	1643 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	BAG6	P46379	1132 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	ATP1A2	P50993	1020 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	TERF1	P54274	439 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	SKOR1	P84550	965 aa		9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	HSP90AA2P	Q14568	343 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN22-208	ENST00000529045	DISP2	A7MBM2	1401 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	C1orf167	Q5SNV9	1468 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	ST8SIA5	O15466	376 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	ZBTB24	O43167	697 aa	Predicted RBP	9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	XRCC6	P12956	609 aa	Known RBP eCLIP	9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	SCNN1A	P37088	669 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	SWI5	Q1ZZU3	235 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	NBPF20	Q3BBV1	942 aa		9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	POLR3A	O14802	1390 aa	Predicted RBP	9.23	□□□□□ -0.93
PTPN22-208	ENST00000529045	SLIT2	O94813	1529 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	POTEC	B2RU33	542 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	ATP2B4	P23634	1241 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	TRIM32	Q13049	653 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	SKOR2	Q2VWA4	1001 aa	Predicted RBP	9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	RNF20	Q5VTR2	975 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	DEFB132	Q7Z7B7	95 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	SKAP1	Q86WV1	359 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	RWDD1	Q9H446	243 aa	Predicted RBP	9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	AMOTL2	Q9Y2J4	779 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	PCDHB11	Q9Y5F2	797 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	PTPRU	Q92729	1446 aa		9.22	□□□□□ -0.93
PTPN22-208	ENST00000529045	USP32	Q8NFA0	1604 aa		9.21	□□□□□ -0.93
PTPN22-208	ENST00000529045	SENP3-EIF4A1	A0A087X0R7	540 aa		9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	OCLN	Q16625	522 aa		9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	CCDC27	Q2M243	656 aa		9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	NBPF1	Q3BBV0	1214 aa		9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	SEPT12	Q8IYM1	358 aa		9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	NAP1L5	Q96NT1	182 aa	Predicted RBP	9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	TNS1	Q9HBL0	1735 aa	Known RBP	9.21	□□□□□ -0.94
PTPN22-208	ENST00000529045	SFI1	A8K8P3	1242 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	IGHD	P01880	384 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	CT47B1	P0C2W7	299 aa	Predicted RBP	9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	CCDC102B	Q68D86	513 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	CYP4X1	Q8N118	509 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	TPCN2	Q8NHX9	752 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	ZNF428	Q96B54	188 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	MYH16	Q9H6N6	1097 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	TOR4A	Q9NXH8	423 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	CDV3	Q9UKY7	258 aa	Known RBP	9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	CHD4	Q14839	1912 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	PLCH1	Q4KWH8	1693 aa		9.2	□□□□□ -0.94
PTPN22-208	ENST00000529045	SCTR	P47872	440 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	SERPINB4	P48594	390 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	INTS6L	Q5JSJ4	861 aa	Known RBP	9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	WDR63	Q8IWG1	891 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	SNX21	Q969T3	373 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	KCTD15	Q96SI1	283 aa	Predicted RBP	9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	MAP7D2	Q96T17	732 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	AAAS	Q9NRG9	546 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	IBTK	Q9P2D0	1353 aa	Predicted RBP	9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	SBNO2	Q9Y2G9	1366 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	CDC42BPG	Q6DT37	1551 aa		9.19	□□□□□ -0.94
PTPN22-208	ENST00000529045	PRMT3	O60678	531 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	CANX	P27824	592 aa	Known RBP	9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	ARID4A	P29374	1257 aa	Predicted RBP	9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	SEC13	P55735	322 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	NPHP3	Q7Z494	1330 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	UNC5CL	Q8IV45	518 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	C1orf216	Q8TAB5	229 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	PXDN	Q92626	1479 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	PDCL3	Q9H2J4	239 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	GRPEL1	Q9HAV7	217 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	MAP4K5	Q9Y4K4	846 aa		9.18	□□□□□ -0.94
PTPN22-208	ENST00000529045	RREB1	Q92766	1687 aa		9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	WNT7B	P56706	349 aa		9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	RAB15	P59190	212 aa		9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	USP4	Q13107	963 aa		9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	GBP4	Q96PP9	640 aa		9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	SLK	Q9H2G2	1235 aa	Predicted RBP	9.17	□□□□□ -0.94
PTPN22-208	ENST00000529045	KIF1A	Q12756	1690 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	KIF16B	Q96L93	1317 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	TTC24	A2A3L6	582 aa	Predicted RBP	9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	ERVH48-1	M5A8F1	160 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	APAF1	O14727	1248 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	LGR5	O75473	907 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	BCAR3	O75815	825 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	VARS	P26640	1264 aa	Known RBP	9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	DDIT3	P35638	169 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	HS1BP3	Q53T59	392 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	HSCB	Q8IWL3	235 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	ZNF775	Q96BV0	537 aa	Predicted RBP	9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	TRIM44	Q96DX7	344 aa	Predicted RBP	9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	PRIMPOL	Q96LW4	560 aa		9.16	□□□□□ -0.94
PTPN22-208	ENST00000529045	CXXC1	Q9P0U4	656 aa	Predicted RBP	9.16	□□□□□ -0.94

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