RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 A0A087WWV3 80 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 HS1BP3Q53T59 392 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 XIRP1Q702N8 1843 aaKnown RBP19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 NOLC1Q14978 699 aaKnown RBP eCLIP19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 SASS6Q6UVJ0 657 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 JAK2O60674 1132 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 SYNE4Q8N205 404 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 COL5A2P05997 1499 aaPredicted RBP19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 PHF14O94880 888 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 CYP21A2P08686 494 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 HAUS7Q99871 368 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 SNRKQ9NRH2 765 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 PYCARDQ9ULZ3 195 aa19.61■□□□□ 0.73
CCDC88B-210ENST00000494566 ASAP1Q9ULH1 1129 aa19.6■□□□□ 0.73
CCDC88B-210ENST00000494566 LIG1P18858 919 aa19.59■□□□□ 0.73
CCDC88B-210ENST00000494566 CSPP1Q1MSJ5 1256 aa19.59■□□□□ 0.73
CCDC88B-210ENST00000494566 LUZP1Q86V48 1076 aa19.59■□□□□ 0.73
CCDC88B-210ENST00000494566 FAM89AQ96GI7 184 aa19.59■□□□□ 0.73
CCDC88B-210ENST00000494566 HSP90B1P14625 803 aaKnown RBP19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 SPDYE4A6NLX3 237 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 ERVV-2B6SEH9 535 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 IGSF3O75054 1194 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 UBE2HP62256 183 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 CBX1P83916 185 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 MCMDC2Q4G0Z9 681 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 HSP90AB3PQ58FF7 597 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 Q6ZUG5 572 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 STOX1Q6ZVD7 989 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 PAG1Q9NWQ8 432 aa19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 NAP1L2Q9ULW6 460 aaPredicted RBP19.58■□□□□ 0.73
CCDC88B-210ENST00000494566 CHST3Q7LGC8 479 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 DNAJC10Q8IXB1 793 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 DRC7Q8IY82 874 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 TMEM87AQ8NBN3 555 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 NEK1Q96PY6 1258 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 LAMB4A4D0S4 1761 aa19.58■□□□□ 0.72
CCDC88B-210ENST00000494566 KCPQ6ZWJ8 1503 aa19.57■□□□□ 0.72
CCDC88B-210ENST00000494566 A0A1B0GUL7 405 aa19.57■□□□□ 0.72
CCDC88B-210ENST00000494566 ZHX1Q9UKY1 873 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-210ENST00000494566 GPTP24298 496 aa19.57■□□□□ 0.72
CCDC88B-210ENST00000494566 KBTBD3Q8NAB2 608 aa19.57■□□□□ 0.72
CCDC88B-210ENST00000494566 ADORA1P30542 326 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 FKBP4Q02790 459 aaKnown RBP eCLIP19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 TMOD3Q9NYL9 352 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 SOS2Q07890 1332 aaPredicted RBP19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 LRMPQ12912 555 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 TTC6Q86TZ1 520 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 BRF1Q92994 677 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 CARD10Q9BWT7 1032 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 ATP6V1DQ9Y5K8 247 aa19.56■□□□□ 0.72
CCDC88B-210ENST00000494566 EYA2O00167 538 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 KDM4AO75164 1064 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 FGD1P98174 961 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 NRBP1Q9UHY1 535 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 JCADQ9P266 1359 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 IFIT1P09914 478 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 USPL1Q5W0Q7 1092 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 PTGS1P23219 599 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 PI16Q6UXB8 463 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 CCDC191Q8NCU4 936 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 ERCC4Q92889 916 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 HMG20BQ9P0W2 317 aa19.55■□□□□ 0.72
CCDC88B-210ENST00000494566 TJP1Q07157 1748 aa19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 PARP4Q9UKK3 1724 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 TTLL5Q6EMB2 1281 aa19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 PIGBQ92521 554 aa19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 KCNF1Q9H3M0 494 aa19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 ABCC6O95255 1503 aa19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 IL15P40933 162 aaPredicted RBP19.54■□□□□ 0.72
CCDC88B-210ENST00000494566 GOLGA6L4A6NEF3 574 aa19.53■□□□□ 0.72
CCDC88B-210ENST00000494566 ANKRD1Q15327 319 aa19.53■□□□□ 0.72
CCDC88B-210ENST00000494566 SYTL4Q96C24 671 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-210ENST00000494566 NUP188Q5SRE5 1749 aa19.53■□□□□ 0.72
CCDC88B-210ENST00000494566 A0A0G2JS52 829 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 NKX1-1Q15270 411 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 BTG4Q9NY30 223 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 DACT1Q9NYF0 836 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 U3KPZ7 1027 aaPredicted RBP19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 CCT2P78371 535 aaKnown RBP19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 SCARF1Q14162 830 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 HLFQ16534 295 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 CCDC57Q2TAC2 916 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 ZNF710Q8N1W2 664 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 PIBF1Q8WXW3 757 aa19.52■□□□□ 0.72
CCDC88B-210ENST00000494566 DYNC1I1O14576 645 aa19.52■□□□□ 0.71
CCDC88B-210ENST00000494566 APOBRQ0VD83 1088 aa19.52■□□□□ 0.71
CCDC88B-210ENST00000494566 FTOQ9C0B1 505 aaKnown RBP eCLIP19.52■□□□□ 0.71
CCDC88B-210ENST00000494566 M0R2C6 588 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 TSGA10IPQ3SY00 556 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 GORABQ5T7V8 394 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 NCOA5Q9HCD5 579 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 UBR2Q8IWV8 1755 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 MAST3O60307 1309 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 HAND2P61296 217 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 SCRN1Q12765 414 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 TCIRG1Q13488 830 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 GTF3C6Q969F1 213 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 CEP126Q9P2H0 1117 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 SHANK3Q9BYB0 1731 aa19.51■□□□□ 0.71
CCDC88B-210ENST00000494566 TAF7LQ5H9L4 462 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms