RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 RAB15P59190 212 aa9.59□□□□□ -0.87
CCDC88A-213ENST00000476903 STRN4Q9NRL3 753 aa9.59□□□□□ -0.87
CCDC88A-213ENST00000476903 SPATA31A1Q5TZJ5 1347 aa9.58□□□□□ -0.88
CCDC88A-213ENST00000476903 TTC21AQ8NDW8 1320 aa9.58□□□□□ -0.88
CCDC88A-213ENST00000476903 CAMTA1Q9Y6Y1 1673 aa9.58□□□□□ -0.88
CCDC88A-213ENST00000476903 CPSF1Q10570 1443 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-213ENST00000476903 KTN1Q86UP2 1357 aaKnown RBP9.58□□□□□ -0.88
CCDC88A-213ENST00000476903 TTC21BQ7Z4L5 1316 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 RGPD1P0DJD0 1748 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 SF3B2Q13435 895 aaKnown RBP9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 PPP2R2DQ66LE6 453 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 LRRC4BQ9NT99 713 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 USP54Q70EL1 1684 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 COL18A1P39060 1754 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 RGPD5Q99666 1765 aa9.57□□□□□ -0.88
CCDC88A-213ENST00000476903 COL5A2P05997 1499 aaPredicted RBP9.56□□□□□ -0.88
CCDC88A-213ENST00000476903 AATKQ6ZMQ8 1374 aa9.56□□□□□ -0.88
CCDC88A-213ENST00000476903 PUS7Q96PZ0 661 aaKnown RBP9.56□□□□□ -0.88
CCDC88A-213ENST00000476903 CLSPNQ9HAW4 1339 aa9.56□□□□□ -0.88
CCDC88A-213ENST00000476903 CD163L1Q9NR16 1453 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 NINLQ9Y2I6 1382 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 ST20-MTHFSA0A0A6YYL1 179 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 ZBTB7CA1YPR0 619 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 LARP1Q6PKG0 1096 aaKnown RBP9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 HDGFL2Q7Z4V5 671 aaPredicted RBP9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 KCNH5Q8NCM2 988 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 TMC1Q8TDI8 760 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 USP35Q9P2H5 1018 aa9.55□□□□□ -0.88
CCDC88A-213ENST00000476903 WNK3Q9BYP7 1800 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 PARP4Q9UKK3 1724 aaKnown RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 TCP11L2Q8N4U5 519 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 PROCA1Q8NCQ7 364 aaPredicted RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 NEDD1Q8NHV4 660 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 GTPBP3Q969Y2 492 aaKnown RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 PCGF6Q9BYE7 350 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 HMX1Q9NP08 348 aaPredicted RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 CYLDQ9NQC7 956 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 TERF2IPQ9NYB0 399 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 TIMELESSQ9UNS1 1208 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 THRAP3Q9Y2W1 955 aaKnown RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 DYRK1BQ9Y463 629 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 NFAT5O94916 1531 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 LTN1O94822 1766 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 CRB1P82279 1406 aa9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 EDC4Q6P2E9 1401 aaKnown RBP9.54□□□□□ -0.88
CCDC88A-213ENST00000476903 TNS1Q9HBL0 1735 aaKnown RBP9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 ABCC6O95255 1503 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 KRBA1A5PL33 1030 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 GPC1P35052 558 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 SKIV2LQ15477 1246 aaKnown RBP9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 DZIP3Q86Y13 1208 aaKnown RBP9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 TESK2Q96S53 571 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 SLC12A5Q9H2X9 1139 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 SLC24A3Q9HC58 644 aa9.53□□□□□ -0.88
CCDC88A-213ENST00000476903 A0A1W2PP64 1363 aa9.52□□□□□ -0.88
CCDC88A-213ENST00000476903 USP31Q70CQ4 1352 aa9.52□□□□□ -0.88
CCDC88A-213ENST00000476903 USP47Q96K76 1375 aa9.52□□□□□ -0.88
CCDC88A-213ENST00000476903 OIP5O43482 229 aa9.52□□□□□ -0.89
CCDC88A-213ENST00000476903 BAG6P46379 1132 aa9.52□□□□□ -0.89
CCDC88A-213ENST00000476903 PODNQ7Z5L7 613 aa9.52□□□□□ -0.89
CCDC88A-213ENST00000476903 DEFB132Q7Z7B7 95 aa9.52□□□□□ -0.89
CCDC88A-213ENST00000476903 ARHGEF25Q86VW2 580 aa9.52□□□□□ -0.89
CCDC88A-213ENST00000476903 SNRPNP63162 240 aaKnown RBP9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 TMF1P82094 1093 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 PDE3BQ13370 1112 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 FAM182BQ5T319 152 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 FOXR1Q6PIV2 292 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 RIPOR1Q6ZS17 1223 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 FAM196AQ6ZSG2 479 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 NME9Q86XW9 330 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 WDR17Q8IZU2 1322 aa9.51□□□□□ -0.89
CCDC88A-213ENST00000476903 LRRC37A3O60309 1634 aa9.5□□□□□ -0.89
CCDC88A-213ENST00000476903 K7ELQ4 463 aaPredicted RBP9.5□□□□□ -0.89
CCDC88A-213ENST00000476903 THBS1P07996 1170 aa9.5□□□□□ -0.89
CCDC88A-213ENST00000476903 POU4F2Q12837 409 aa9.5□□□□□ -0.89
CCDC88A-213ENST00000476903 TOM1L2Q6ZVM7 507 aa9.5□□□□□ -0.89
CCDC88A-213ENST00000476903 SBF2Q86WG5 1849 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 DISP2A7MBM2 1401 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 A0A1W2PRU2 124 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 ATP5J2-PTCD1G3V325 749 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 CSB-PGBD3P0DP91 1061 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 CDCA8Q53HL2 280 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 GRIP2Q9C0E4 1043 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 ANKRD36BQ8N2N9 1353 aa9.49□□□□□ -0.89
CCDC88A-213ENST00000476903 OVOS2A0A0J9YW53 1432 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 OVOS2Q6IE36 1432 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 KIF20BQ96Q89 1820 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 H7C1W4 665 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 AP1G2O75843 785 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 TRIM37O94972 964 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 COL8A1P27658 744 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 SH3D19Q5HYK7 790 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 C1orf229Q6ZS94 237 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 GALNT6Q8NCL4 622 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 CDCA7Q9BWT1 371 aaPredicted RBP9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 PEAK1Q9H792 1746 aa9.48□□□□□ -0.89
CCDC88A-213ENST00000476903 SHISA8B8ZZ34 492 aa9.47□□□□□ -0.89
CCDC88A-213ENST00000476903 GIGYF1O75420 1035 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms