RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	LRRC41	Q15345	812 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	ANKRD18A	Q8IVF6	992 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC26	Q8TAB7	109 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	WDR66	Q8TBY9	1149 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	OXER1	Q8TDS5	423 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SPAG5	Q96R06	1193 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	SENP2	Q9HC62	589 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	CLIP2	Q9UDT6	1046 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	GTF3C4	Q9UKN8	822 aa		4.1	□□□□□ -1.75
UBR3-208	ENST00000474426	DYNC1I1	O14576	645 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	ZSCAN9	O15535	394 aa	Predicted RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	AKR1B10	O60218	316 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	MSL3P1	P0C860	447 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CYP11B2	P19099	503 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CTAG1A	P78358	180 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CHAF1A	Q13111	956 aa	Predicted RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	MKRN4P	Q13434	485 aa	Predicted RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	PKN2	Q16513	984 aa	Known RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	FILIP1L	Q4L180	1135 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CCDC158	Q5M9N0	1113 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	WWC2	Q6AWC2	1192 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CYP26C1	Q6V0L0	522 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	DRAXIN	Q8NBI3	349 aa	Predicted RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	ASIC4	Q96FT7	647 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CHMP3	Q9Y3E7	222 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	RABGAP1	Q9Y3P9	1069 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	SPAG9	O60271	1321 aa	Known RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	DIAPH1	O60610	1272 aa	Known RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CYP1A2	P05177	515 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	TNNI2	P48788	182 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	UBASH3A	P57075	661 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	CBX1	P83916	185 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	TAF1C	Q15572	869 aa	Predicted RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	IRGC	Q6NXR0	463 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	METTL16	Q86W50	562 aa	Known RBP	4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	HPS3	Q969F9	1004 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	TPCN1	Q9ULQ1	816 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	PPP2R3B	Q9Y5P8	575 aa		4.09	□□□□□ -1.75
UBR3-208	ENST00000474426	LRRC10B	A6NIK2	292 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	NPHP1	O15259	732 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	OFD1	O75665	1012 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	FMNL1	O95466	1100 aa	Predicted RBP	4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	NCAM1	P13591	858 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	CDC27	P30260	824 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	SCNN1A	P37088	669 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	GEMIN4	P57678	1058 aa	Known RBP	4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	IRX1	P78414	480 aa	Predicted RBP	4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	NFKBIB	Q15653	356 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	KIF4B	Q2VIQ3	1234 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	NEK10	Q6ZWH5	1172 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	TRIM42	Q8IWZ5	723 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	DCLK2	Q8N568	766 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	MYRIP	Q8NFW9	859 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	GSDMB	Q8TAX9	411 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	RABGGTA	Q92696	567 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	TRIM52	Q96A61	297 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	FAXDC2	Q96IV6	333 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	LMCD1	Q9NZU5	365 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	PIK3R4	Q99570	1358 aa		4.09	□□□□□ -1.76
UBR3-208	ENST00000474426	FOXD2	O60548	495 aa	Predicted RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	FGFR1OP	O95684	399 aa	Known RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	GYS1	P13807	737 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	UBA7	P41226	1012 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	GJA8	P48165	433 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	RCAN1	P53805	252 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	PPP1R18	Q6NYC8	613 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	RTL10	Q7L3V2	364 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	HAUS7	Q99871	368 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	CAPS2	Q9BXY5	557 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	C6orf203	Q9P0P8	240 aa	Predicted RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	CALCOCO1	Q9P1Z2	691 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	SLAIN2	Q9P270	581 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	STXBP3	O00186	592 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	ORC4	O43929	436 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	SASH1	O94885	1247 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	HARS	P12081	509 aa	Known RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	RBL2	Q08999	1139 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	BIRC3	Q13489	604 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	ATP2B3	Q16720	1220 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	SLC4A8	Q2Y0W8	1093 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	HHAT	Q5VTY9	493 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	CCDC191	Q8NCU4	936 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	TRIM7	Q9C029	511 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	TOMM22	Q9NS69	142 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	PGAP2	Q9UHJ9	254 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	CFAP45	Q9UL16	551 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	B3GALNT1	O75752	331 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	ZNF75CP	Q92670	426 aa	Predicted RBP	4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	PGBD4	Q96DM1	585 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	TMEM165	Q9HC07	324 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	QPCTL	Q9NXS2	382 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	TAGLN3	Q9UI15	199 aa		4.08	□□□□□ -1.76
UBR3-208	ENST00000474426	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	GPR37	O15354	613 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	CA8	P35219	290 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	RPS6KA3	P51812	740 aa		4.07	□□□□□ -1.76
UBR3-208	ENST00000474426	SNX16	P57768	344 aa		4.07	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms